View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_15 (Length: 320)
Name: NF1403_low_15
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 95 - 295
Target Start/End: Original strand, 48585836 - 48586036
Alignment:
| Q |
95 |
actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttctttttattat |
194 |
Q |
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| T |
48585836 |
actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttctttttattat |
48585935 |
T |
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| Q |
195 |
ttattgagtgattttcttcttcaaagttggagatacctatagcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtgtcaca |
294 |
Q |
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| T |
48585936 |
ttattgagtgattttcttcttcaaagttggagatacctatagcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtgtcaca |
48586035 |
T |
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| Q |
295 |
g |
295 |
Q |
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| T |
48586036 |
g |
48586036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 48640409 - 48640495
Alignment:
| Q |
95 |
actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt |
181 |
Q |
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| T |
48640409 |
actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt |
48640495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 48662042 - 48662100
Alignment:
| Q |
94 |
cactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag |
152 |
Q |
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| T |
48662042 |
cactttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggag |
48662100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 48629349 - 48629401
Alignment:
| Q |
97 |
tttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaag |
149 |
Q |
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| T |
48629349 |
tttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaag |
48629401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 48667637 - 48667689
Alignment:
| Q |
100 |
cctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag |
152 |
Q |
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| T |
48667637 |
cctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggag |
48667689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 48617827 - 48617776
Alignment:
| Q |
94 |
cactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagaga |
145 |
Q |
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| T |
48617827 |
cactttgctagtctaagaagagggtttatgtgtccttgtgctggataagaga |
48617776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 25892522 - 25892445
Alignment:
| Q |
106 |
ccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattttt |
183 |
Q |
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|||| ||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| || || ||||||| |
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| T |
25892522 |
ccaagaagatggtttaggtgtcgttgaaatggaaaagagacaaggaggagcttaatgggatctttgtttgccattttt |
25892445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 19665183 - 19665125
Alignment:
| Q |
94 |
cactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag |
152 |
Q |
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|||||| |||||| || |||| ||||||||||||||||||||||| | |||| |||||| |
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| T |
19665183 |
cactttgctagtctaagaagagggtttatgtgtccttgtgctggatatgagataaggag |
19665125 |
T |
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