View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1403_low_16 (Length: 315)
Name: NF1403_low_16
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_16 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 315
Target Start/End: Original strand, 40147183 - 40147468
Alignment:
| Q |
30 |
gtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40147183 |
gtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagt |
40147282 |
T |
|
| Q |
130 |
tgttggaagatggtgggcttggtaaaggtgcttgggcgatacacaaaatgatttctttgcagtcaaatgaagagttgaagaatcactacatgtcttggtt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40147283 |
tgttggaagatggtgggcttggtaaaggtgcttgggcgatacacaaaatgatttctttgcagtcaaatgaagagttgaagaatcactacgtgtcttggtt |
40147382 |
T |
|
| Q |
230 |
ggaaaatccaaacatcgctagattttttaccgcggccggtaaaaatacattagccagtagcaattccccgtggtttgatgtttatg |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40147383 |
ggaaaatccaaacatcgttagattttttaccgcggccggtaaaaatacattagccagtagcaattccccgtggtttgatgtttatg |
40147468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 8102762 - 8102575
Alignment:
| Q |
30 |
gtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagt |
129 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| || || || |||| ||||||||| || |||| |
|
|
| T |
8102762 |
gtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagt |
8102663 |
T |
|
| Q |
130 |
tgttggaagatggtgggcttggtaaaggtgcttgggcgatacacaaaatgatttctttgcagtcaaatgaagagttgaagaatcacta |
217 |
Q |
| |
|
|||||||||| || ||| |||||||| |||||||| ||| ||| ||| ||||| |||||| |||||||| ||||||||||| |||| |
|
|
| T |
8102662 |
tgttggaagaaggcgggtttggtaaatgtgcttggaagatgcacgaaacgatttgtttgcactcaaatgagaagttgaagaatgacta |
8102575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 6500773 - 6500652
Alignment:
| Q |
44 |
tagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttggaagatggt |
143 |
Q |
| |
|
|||| ||||| ||||||||| ||| || |||||||||||||||||||||| || ||||||||||| |||||||| || |||||||||||||| || |
|
|
| T |
6500773 |
tagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttggaagaaggc |
6500674 |
T |
|
| Q |
144 |
gggcttggtaaaggtgcttggg |
165 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
6500673 |
gggattggtaaaggtgcttggg |
6500652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 11969219 - 11969102
Alignment:
| Q |
44 |
tagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttggaagatggt |
143 |
Q |
| |
|
|||||| || |||||| ||||||| || || ||||||||||||||||||||| | ||||| ||||| |||||||||| || |||| || | |||||| |
|
|
| T |
11969219 |
tagatcgagatttgtttcaccattaccggaggattattttggaaatgctgttataatttgtggggtttcaatgaaagctgggtagttattaaaggatggt |
11969120 |
T |
|
| Q |
144 |
gggcttggtaaaggtgct |
161 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
11969119 |
gggctcggtaagggtgct |
11969102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 7628923 - 7628789
Alignment:
| Q |
29 |
agtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagag |
128 |
Q |
| |
|
|||||||||||||| |||| ||||| || |||||||||| || |||||||||||||||||||| || | ||||| ||||| ||||||||| | || |
|
|
| T |
7628923 |
agtcgcgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctgaggaa |
7628824 |
T |
|
| Q |
129 |
ttgttggaagatggtgggcttggtaaaggtgcttg |
163 |
Q |
| |
|
|||||||| || ||||| ||| ||||||||||||| |
|
|
| T |
7628823 |
ttgttggaggaaggtggactttgtaaaggtgcttg |
7628789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 162
Target Start/End: Original strand, 7655961 - 7656087
Alignment:
| Q |
36 |
ataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttgg |
135 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||| ||||||||||||||||| || || || ||| || ||| |||||||| || |||||||||| |
|
|
| T |
7655961 |
ataggagttagaccaagacttgttccaccattgccggaagattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttgg |
7656060 |
T |
|
| Q |
136 |
aagatggtgggcttggtaaaggtgctt |
162 |
Q |
| |
|
| || |||||| ||||||||||||||| |
|
|
| T |
7656061 |
aggaaggtgggattggtaaaggtgctt |
7656087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 7637369 - 7637236
Alignment:
| Q |
29 |
agtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagag |
128 |
Q |
| |
|
||||| |||||||| | || ||||||| |||||||| || || |||||||||||||||||||| || | ||||| ||||| ||||||||| || || |
|
|
| T |
7637369 |
agtcgtgataggagttcgaccaaggttagttccaccgttaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaa |
7637270 |
T |
|
| Q |
129 |
ttgttggaagatggtgggcttggtaaaggtgctt |
162 |
Q |
| |
|
|||||||| || ||||| ||| |||||||||||| |
|
|
| T |
7637269 |
ttgttggaggaaggtggactttgtaaaggtgctt |
7637236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 7615546 - 7615418
Alignment:
| Q |
35 |
gataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttg |
134 |
Q |
| |
|
|||||||| | || ||||||| ||||||||||| || ||| |||||||||||||||| || | ||||| ||||| |||||||| || |||||| || |
|
|
| T |
7615546 |
gataggagttcgaccaaggttagttccaccattaccagaatattattttggaaatgcacttataagttgtatggttaaaatgaaagttggggagttggtg |
7615447 |
T |
|
| Q |
135 |
gaagatggtgggcttggtaaaggtgcttg |
163 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| |
|
|
| T |
7615446 |
gaagaaggtggactttgtaaaggtgcttg |
7615418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 7606538 - 7606479
Alignment:
| Q |
29 |
agtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaa |
88 |
Q |
| |
|
||||| |||||||| | || ||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
7606538 |
agtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaa |
7606479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 8999230 - 8999112
Alignment:
| Q |
44 |
tagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttga-agtttgtagggttacaatgaaagcgggagagttgttggaagatgg |
142 |
Q |
| |
|
||||| |||||| ||||||||||||| || || ||||||||||||||| |||| |||||| | |||||||||||||| ||||| || | | ||| || |
|
|
| T |
8999230 |
tagattaaggttgattccaccattgccagaggaatattttggaaatgct-ttgatagtttgcaaggttacaatgaaagttggagaattacttggagaagg |
8999132 |
T |
|
| Q |
143 |
tgggcttggtaaaggtgctt |
162 |
Q |
| |
|
||| || ||||||||||||| |
|
|
| T |
8999131 |
tggactgggtaaaggtgctt |
8999112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 8935924 - 8936052
Alignment:
| Q |
35 |
gataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttg |
134 |
Q |
| |
|
|||||||| | || ||||||| ||||||||||| || ||| |||||||||||||||| ||| | ||||| ||||| ||||| ||| || ||||||||| |
|
|
| T |
8935924 |
gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcagttataagttgtatggttaaaatgacagctggggagttgttg |
8936023 |
T |
|
| Q |
135 |
gaagatggtgggcttggtaaaggtgcttg |
163 |
Q |
| |
|
| || ||||| ||| ||||||||||||| |
|
|
| T |
8936024 |
aaggaaggtggactttgtaaaggtgcttg |
8936052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 8938714 - 8938753
Alignment:
| Q |
49 |
caaggtttgttccaccattgcctgaagattattttggaaa |
88 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
8938714 |
caaggtttgttccaccattaccagaagattattttggaaa |
8938753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 8910985 - 8911095
Alignment:
| Q |
35 |
gataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttg |
134 |
Q |
| |
|
|||||||| | || ||||||| ||||||||||| || ||| |||||||||||||||| ||| | ||||| ||||| |||||||| || ||| ||||| |
|
|
| T |
8910985 |
gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcaattgtaagttgtatggttaaaatgaaagttggggagctgttg |
8911084 |
T |
|
| Q |
135 |
gaagatggtgg |
145 |
Q |
| |
|
|| || ||||| |
|
|
| T |
8911085 |
gaggaaggtgg |
8911095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 15195980 - 15196094
Alignment:
| Q |
44 |
tagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttggaagatggt |
143 |
Q |
| |
|
|||||||||||| ||||||||| | | | |||||||||||||||||| | ||||||| ||||||||||||||| | ||| | || ||||| || |
|
|
| T |
15195980 |
tagatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggc |
15196079 |
T |
|
| Q |
144 |
gggcttggtaaaggt |
158 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15196080 |
gggcttggtaaaggt |
15196094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University