View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_19 (Length: 308)
Name: NF1403_low_19
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 42173298 - 42173471
Alignment:
| Q |
70 |
tccttagctgaatctaacttctcttttacctgtgagtttcttttccttttccttgcaagttctgctgctgtaggacttttcatctctttgttagttactc |
169 |
Q |
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| T |
42173298 |
tcctcagctgaatctaacttctcttttacctgtgagtttcttttccttttccttgcaagttctgctgctgtaggacttttcatctctttgttagttactc |
42173397 |
T |
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| Q |
170 |
cattcttaacattctcactgtcgtctattttctcaacttcttcgtcaaagtcgtcctttaccggtttctgtggt |
243 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42173398 |
cattcttaacattctcactgtcatctattttctcaacttcttcgtcaaagtcgtcctttaccggtttctgtggt |
42173471 |
T |
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