View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_2 (Length: 766)
Name: NF1403_low_2
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Original strand, 14869074 - 14869741
Alignment:
| Q |
1 |
ccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgccgacact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14869074 |
ccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacgaggaatggaaagcttcaacgccgacact |
14869173 |
T |
|
| Q |
101 |
cctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatagtcactg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869174 |
cctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatagtcactg |
14869273 |
T |
|
| Q |
201 |
acatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcattctgcaatgaactc |
300 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14869274 |
acatgttctatccttggagtgttgatgttgctgatgaattgggaattccaaggttaatttgtattagtggaagttactttgctcattctgcaatgaactc |
14869373 |
T |
|
| Q |
301 |
tattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaactt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869374 |
tattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaactt |
14869473 |
T |
|
| Q |
401 |
ccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatcactgtttgatagtcatgaga |
500 |
Q |
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| T |
14869474 |
ccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatcactgtttgatagtcatgaga |
14869573 |
T |
|
| Q |
501 |
ttgagagtacatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14869574 |
ttgagagtacatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataa |
14869673 |
T |
|
| Q |
601 |
agcgggtagagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaaga |
668 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14869674 |
agcgggtagagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaaga |
14869741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 4 - 668
Target Start/End: Complemental strand, 16909591 - 16908924
Alignment:
| Q |
4 |
cgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgccgacactcct |
103 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| || ||||||||| |
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| T |
16909591 |
cgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccacaaggaatggaaagtttcaatgctgacactcct |
16909492 |
T |
|
| Q |
104 |
aatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatagtcactgaca |
203 |
Q |
| |
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|| || ||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
16909491 |
aaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaactatttcgtgacatgaaacctgatttcatagtcactgaca |
16909392 |
T |
|
| Q |
204 |
tgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcattctgcaatgaactctat |
303 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16909391 |
tgttttatccttggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaatgaactctat |
16909292 |
T |
|
| Q |
304 |
tgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaacttccg |
403 |
Q |
| |
|
|||||| || |||||| || |||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||| |
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|
| T |
16909291 |
tgaacaatttgaacctcatgccaaagttaaatcgaatagcgtaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttgcaacttccg |
16909192 |
T |
|
| Q |
404 |
gattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatcactgtttgatag---tcatgaga |
500 |
Q |
| |
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||||||||||||||||| |||| ||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||| | |||||| |
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|
| T |
16909191 |
gattggcttagagcaccaaatggttatacttatttgatgaagatgatcaaagattcagagaaaaaaagctatggatcattgtttgatagctattatgaga |
16909092 |
T |
|
| Q |
501 |
ttgagagtacatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataa |
600 |
Q |
| |
|
|||| |||| |||||||| ||||||||| ||| ||||||| ||||||||||| |||||||||||||| | ||| ||||| |||||||||| ||||| |
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|
| T |
16909091 |
ttgaaggtacttatgaggactattacaagatagccatgggaagtaagagttggagtgtgggaccagtttctttgtggatgaacaaagatgattcagataa |
16908992 |
T |
|
| Q |
601 |
agcgggtagagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaaga |
668 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
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|
| T |
16908991 |
agctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaaga |
16908924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 600
Target Start/End: Original strand, 12613301 - 12613389
Alignment:
| Q |
512 |
tatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataa |
600 |
Q |
| |
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||||||||||||||||||| ||| | ||||| ||| |||||||| | ||||||||||| |||||| |||||||||| ||| ||||| |
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| T |
12613301 |
tatgaggagcattacaagaatgcatttggaacaaagtgttggagcttaggaccagtttcattatgggcaaaccaagatgtttctgataa |
12613389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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