View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1403_low_20 (Length: 307)

Name: NF1403_low_20
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1403_low_20
NF1403_low_20
[»] chr7 (2 HSPs)
chr7 (72-213)||(6612085-6612226)
chr7 (79-133)||(17293994-17294048)
[»] chr8 (8 HSPs)
chr8 (78-209)||(26088518-26088649)
chr8 (79-209)||(14726655-14726785)
chr8 (79-209)||(15329282-15329412)
chr8 (79-209)||(15509651-15509781)
chr8 (72-197)||(30648219-30648344)
chr8 (79-209)||(28865378-28865509)
chr8 (81-205)||(29552143-29552267)
chr8 (81-200)||(24508494-24508613)
[»] chr3 (1 HSPs)
chr3 (77-200)||(4819161-4819284)
[»] chr1 (1 HSPs)
chr1 (79-133)||(26087382-26087436)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 6612226 - 6612085
Alignment:
Q  72 gaagccataactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6612226 gaagccataactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatatttgactg 6612127  T
Q  172 tgaggcacgagactgcactgcatattgctattaagaatcaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6612126 tgaggcacgagactgcactgcatattgctattaagaatcaac 6612085  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 17294048 - 17293994
Alignment:
Q  79 taactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatt 133  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17294048 taactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaatt 17293994  T

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Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 26088518 - 26088649
Alignment:
Q  78 ataactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgaggc 177  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||   | ||||||   |||||||||||||| ||||||||||| ||||||||||    
T  26088518 ataactcctcttcattttgcaagtcaaattggtgaggttaatcatttagaatactttctcttcttgtgtccggaatctattgaatacttaactgtgaggc 26088617  T
Q  178 acgagactgcactgcatattgctattaagaat 209  Q
    ||||||||||||||||||||||| ||||||||    
T  26088618 acgagactgcactgcatattgctgttaagaat 26088649  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 14726655 - 14726785
Alignment:
Q  79 taactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgaggca 178  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||| |   ||||||   |||||||||||||||||||||||||||||||| |||||    
T  14726655 taactcctcttcatttcgcaagtcaaaatggtgaggttgatcttttagtttgctttctcttattgtgtccggaatccattgaatacttgactgtaaggca 14726754  T
Q  179 cgagactgcactgcatattgctattaagaat 209  Q
     ||||||||||||||||||||| ||||||||    
T  14726755 ggagactgcactgcatattgctgttaagaat 14726785  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 15329282 - 15329412
Alignment:
Q  79 taactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgaggca 178  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||   | |||||| |||||||||||| | | ||||||||||      
T  15329282 taactcctcttcattttgcaagccaaattggtgaggttgatcttttagctcactttctcttctcgtgtccagaatccattgaagattggactgtgaggtg 15329381  T
Q  179 cgagactgcactgcatattgctattaagaat 209  Q
    ||||||  |||||||||||||||||||||||    
T  15329382 cgagaccccactgcatattgctattaagaat 15329412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 15509651 - 15509781
Alignment:
Q  79 taactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgaggca 178  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||   | |||||| |||||||||||| | | ||||||||||      
T  15509651 taactcctcttcattttgcaagccaaattggtgaggttgatcttttagctcactttctcttctcgtgtccagaatccattgaagattggactgtgaggtg 15509750  T
Q  179 cgagactgcactgcatattgctattaagaat 209  Q
    ||||||  |||||||||||||||||||||||    
T  15509751 cgagaccccactgcatattgctattaagaat 15509781  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 30648219 - 30648344
Alignment:
Q  72 gaagccataactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactg 171  Q
    |||| |||||||||||||||||||||| |||||| |||||||||| |  | |||||| | ||||||   |||||||||||||| ||||||||||||||||    
T  30648219 gaaggcataactcctcttcattttgcatgtcaaaatggtgaggttcaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactg 30648318  T
Q  172 tgaggcacgagactgcactgcatatt 197  Q
    |||||| |||||||||||| ||||||    
T  30648319 tgaggcgcgagactgcactccatatt 30648344  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 28865378 - 28865509
Alignment:
Q  79 taactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgaggca 178  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||   |||||||| |||||||||||| | | ||||||||||      
T  28865378 taactcctcttcattttgcaagccaaattggtgaggttgatcttttagctcactttctcttattgtgtccagaatccattgaagattggactgtgaggtg 28865477  T
Q  179 cgaga-ctgcactgcatattgctattaagaat 209  Q
     |||| |  |||||||||||||||||||||||    
T  28865478 tgagacccccactgcatattgctattaagaat 28865509  T

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Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 29552143 - 29552267
Alignment:
Q  81 actcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgaggcacg 180  Q
    ||||||||||||| |||||| |||||||| |||||||| ||||||||| | ||||||||    ||||| ||||| |||||||||||||||||||||  ||    
T  29552143 actcctcttcattatgcaagccaaattggagaggttgaccttttagcttactttctcaacgcatgtcctgaatctattgaatacttgactgtgaggtgcg 29552242  T
Q  181 agactgcactgcatattgctattaa 205  Q
    |||| ||||| ||||||||||||||    
T  29552243 agaccgcacttcatattgctattaa 29552267  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 24508494 - 24508613
Alignment:
Q  81 actcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgaggcacg 180  Q
    ||||||||||||||||||||||||| |||||||| |||  ||||||||||| | |||      ||||| |||||||||||| || | |||||||||        
T  24508494 actcctcttcattttgcaagtcaaaatggtgaggatgaaattttagctaaactcctctttgcttgtccagaatccattgaagacgtaactgtgaggggta 24508593  T
Q  181 agactgcactgcatattgct 200  Q
    |||||||| |||||||||||    
T  24508594 agactgcattgcatattgct 24508613  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 4819161 - 4819284
Alignment:
Q  77 cataactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatacttgactgtgagg 176  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||      ||||||||||| |||||||||||||||||||||    
T  4819161 cataactcctcttcattttgcaagtcaaattggcgaggttgaacttttagctaattttctctttgcttgtccggaatctattgaatacttgactgtgagg 4819260  T
Q  177 cacgagactgcactgcatattgct 200  Q
       ||||||||| |||||||||||    
T  4819261 tttgagactgcattgcatattgct 4819284  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 26087436 - 26087382
Alignment:
Q  79 taactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatt 133  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  26087436 taactgctcttcattttgcaagtcaaattggagaggttgaccttttagctaaatt 26087382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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