View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1403_low_22 (Length: 303)
Name: NF1403_low_22
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_22 |
 | |
|
| [»] scaffold0091 (1 HSPs) |
| | |
|
| [»] scaffold0206 (1 HSPs) |
| | |
|
| [»] scaffold0771 (1 HSPs) |
| | |
|
| [»] scaffold0959 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 5382843 - 5382577
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5382843 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatctttcatcactattcaagatatgatttggagagtagaaatcaatcaaaggaa |
5382744 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5382743 |
ttgtgattttgagaaaggtttctcacgttcctaaaaatatcattatggacatacaaagacaagaaaacatccccattggatgttttaaaatgtaacaaaa |
5382644 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaataatct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5382643 |
atattacgattatcatcttgttatttactaatgatttttgtgaaaaaatgtttcataagaataatct |
5382577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 35756030 - 35755770
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||| ||| ||||||||||||| | ||||||||||| ||||||| || |||| ||||||||||||||||||||||| | ||||||||||||| || |
|
|
| T |
35756030 |
catatgctttgagattctatcataaaatatttatgatggtctaagaatcctctatcactattcaagatatgatttggagaacataaatcaatcaaagaaa |
35755931 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
35755930 |
ttttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaaagataacaaaa |
35755831 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
||||||| ||||| || ||||||| ||| | || |||||||| ||| |||||||| ||||| |
|
|
| T |
35755830 |
atattacaattattattttgttatctacgagtgtgttttgtgagaaa-tgtttcatgagaat |
35755770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 291
Target Start/End: Original strand, 23550475 - 23550664
Alignment:
| Q |
101 |
atttggagaatagaaatcaatcaaaggaattgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| | | ||||||||||| |||||| ||||||| |||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
23550475 |
atttggagaacagaaatcaatcaaagaaattttaactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaaggaaacatc |
23550574 |
T |
|
| Q |
201 |
cccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| |||||| || ||||||| ||||| || |||||||| ||| |||||||| ||||| |
|
|
| T |
23550575 |
ctcatttgatgttttaaaagataacaaaaatattaagattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgagaat |
23550664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 26907850 - 26907717
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgattt-ggagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
26907850 |
catatgcttggagattctatcataaaagacttatgatagtctaagaatctttcatcactattcaagatatgttttgggagaatataaatcaatcaaagga |
26907751 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttccta |
162 |
Q |
| |
|
||| ||| ||||||||| | |||||| ||||||| |
|
|
| T |
26907750 |
attttgactttgagaaatgtttctcatgttccta |
26907717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 11222236 - 11222478
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11222236 |
catatacttggagattatatcataaaagacttatgatagtccaagaatcttacatcactattcaagatatgatttggagaatagaaatcaatcaaaggaa |
11222335 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||| ||||| |||||| ||||||| |||||||||| | | ||||||||| ||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
11222336 |
ttttgactttgaaaaaggtttctcatgttcctacaaatatcattcttgtcatacaaagtgaagaaagcatcctcatttgatgttttaaaagataacaaaa |
11222435 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||| |||||||| |
|
|
| T |
11222436 |
atattacaattattattttgttattcactaatgtgttttgtga |
11222478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 42733826 - 42733584
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42733826 |
catatgcttggagattatatcataaaagacttatgatagtccaataatcttacatcactattcaagatatgatttggagaatagaaatcaatcaaaggaa |
42733727 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||| ||||| || ||| |||||| |||||||||| | | ||||||||| ||||||| ||||| ||| ||||||||||||| |||||||| |
|
|
| T |
42733726 |
ttttgactttgaaaaaggtttatcatcttcctacaaatatcattcttgtcatacaaagtgaagaaagcatcctcatatgatgttttaaaagataacaaaa |
42733627 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||| |||||||| |
|
|
| T |
42733626 |
atattacaattattattttgttattcactaatgtgttttgtga |
42733584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 26649399 - 26649542
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26649399 |
catatgtttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattaaagatatgatttggagaatagaaatcaatcaaaggaa |
26649498 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcatt |
173 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
26649499 |
ttttgactttgagaaaggtttctcatgttcctacaaatatcatt |
26649542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 26649558 - 26649717
Alignment:
| Q |
37 |
ttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaattgtgat |
136 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26649558 |
ttggagattctatcataaaagatttatgatggtccaagaatcttccatcactattaaagatatgatttggagaatagaaatcaatcaaaggaattttgac |
26649657 |
T |
|
| Q |
137 |
tttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaa |
196 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||| ||| |||||||| |||||||| |
|
|
| T |
26649658 |
tttgagaaaggtttctcatgttcctacaaatatcattctggttatacaaagtgaagaaaa |
26649717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 26920984 - 26921127
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26920984 |
catatgtttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattaaagatatgatttggagaatagaaatcaatcaaaggaa |
26921083 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcatt |
173 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
26921084 |
ttttgactttgagaaaggtttctcatgttcctacaaatatcatt |
26921127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 26921143 - 26921302
Alignment:
| Q |
37 |
ttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaattgtgat |
136 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26921143 |
ttggagattctatcataaaagatttatgatggtccaagaatcttccatcactattaaagatatgatttggagaatagaaatcaatcaaaggaattttgac |
26921242 |
T |
|
| Q |
137 |
tttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaa |
196 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||| ||| |||||||| |||||||| |
|
|
| T |
26921243 |
tttgagaaaggtttctcatgttcctacaaatatcattctggttatacaaagtgaagaaaa |
26921302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 2641279 - 2641403
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||||||||||||||||||||| || || | | ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
2641279 |
catatgctttgagattctatcataaaatacttatgatggtccaagaatcctctattactgttcaagatatgatttggagaacagaaataaatcaaaggaa |
2641378 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctca |
154 |
Q |
| |
|
|| ||| ||||||||| | |||||| |
|
|
| T |
2641379 |
ttttgactttgagaaaagtttctca |
2641403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 26651730 - 26651811
Alignment:
| Q |
191 |
agaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| ||||| || ||||||| ||||||| |||||||| |
|
|
| T |
26651730 |
agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtga |
26651811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 26923315 - 26923396
Alignment:
| Q |
191 |
agaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| ||||| || ||||||| ||||||| |||||||| |
|
|
| T |
26923315 |
agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtga |
26923396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 15914 - 15725
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15914 |
catatgcttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattcaagatataatttggagaatagaaatcaatcaaaggaa |
15815 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaa |
219 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||| |||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
15814 |
ttttgactttgagaaaggtttctcatgttcctacaaatatcattatggtcatacaaagtgaagaaaacatccttatttgatgttttaaaa |
15725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 25514967 - 25515227
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||| ||| ||||||||||| | |||||||||||||||| |||| | |||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25514967 |
catatgctttgagattctatcataatatacttatgatggtccaaaaatcctatatcactattcaagatatgatttggagaacagaaatcaatcaaaggaa |
25515066 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
25515067 |
ttttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaaagataacaaaa |
25515166 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
||||||| ||||| || ||||||| ||||| || |||||||| ||| |||||||| ||||| |
|
|
| T |
25515167 |
atattacaattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgagaat |
25515227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 50066087 - 50065830
Alignment:
| Q |
31 |
atatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaat |
130 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||||||||||| | || |||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
50066087 |
atatgctttgagattctatcataaaatacttatgatggtccaagaaccctctatcactattcaaggtatgatttggagaacagaaatcaatcaaaggaat |
50065988 |
T |
|
| Q |
131 |
tgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaa |
230 |
Q |
| |
|
| ||| ||||||||||| |||||| |||||| | ||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
50065987 |
tttgactttgagaaaggtttctcatgttcct-acaatatcattttggtcatacaaaatgaagaaaacatcctaatttgatgttttaaaatataac-aaaa |
50065890 |
T |
|
| Q |
231 |
tattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
|||||| ||||| || ||||||| ||||| || |||||||| ||| |||||||| ||||| |
|
|
| T |
50065889 |
tattacaattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgagaat |
50065830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 28069707 - 28069966
Alignment:
| Q |
29 |
acatatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
|||||||||| || ||||||||| ||| | | ||||||||||| ||||| || |||| ||||||| |||||||||||||| || ||| |||||||| | |
|
|
| T |
28069707 |
acatatgctttgaaattctatcatgaaataatcatgatggtccaggaatcctcaatcactattcaat-tatgatttggagaacagtaattaatcaaagaa |
28069805 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaa |
228 |
Q |
| |
|
||| ||| ||||||| ||| |||||| ||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||| | || || |
|
|
| T |
28069806 |
attttgactttgagagaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgtttt-aaacgatacgaa |
28069904 |
T |
|
| Q |
229 |
aatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
|||||||| ||||| || ||||||| ||||| || |||||||| ||| |||||||| ||||| |
|
|
| T |
28069905 |
aatattacaattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgagaat |
28069966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 50518442 - 50518181
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattc-aagatatgatttgg-agaatagaaatcaatcaaagg |
127 |
Q |
| |
|
|||||||||| || | ||||||||||||| ||| |||| || ||||||||||||||| | || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
50518442 |
catatgcttgaagatactatcataaaagatttaggatgatcgaagaatcttccatcatttttttaagatatgatttgggagaatagaaatcaatcaaata |
50518343 |
T |
|
| Q |
128 |
aattgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaa |
227 |
Q |
| |
|
|||| | ||||||||| ||| | |||| |||| || || | |||||||| |||||||| ||||| ||||||| || |||||||||| ||| ||||| |
|
|
| T |
50518342 |
aatttttattttgagagaggttcctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagataacac |
50518243 |
T |
|
| Q |
228 |
aaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
| || |||| ||| |||||||||| |||||||| |||||||| ||| |||||||| ||||| |
|
|
| T |
50518242 |
atat-ttacatgtattatcttgttatctactaatgtattttgtgagaaa-tgtttcatgagaat |
50518181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 11481159 - 11481422
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattc-aagatatgattt-ggagaatagaaatcaatcaaagg |
127 |
Q |
| |
|
|||||| ||| || ||||||||||||||| ||| |||| | ||||||||||||||| | || |||||||||||| |||||| ||||| |||||||| | |
|
|
| T |
11481159 |
catatgtttgaagattctatcataaaagatttaggatgattgaagaatcttccatcatttttttaagatatgatttaggagaaaagaaaacaatcaaatg |
11481258 |
T |
|
| Q |
128 |
aattgtgattttgagaaaggcttctcacgttcct--aaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaac |
225 |
Q |
| |
|
|||| | | ||||||| ||| |||||| |||| | ||||| || ||| ||| |||||||| ||||| ||||||| || ||||| |||| ||| |||| |
|
|
| T |
11481259 |
aatttttactttgagagaggtttctcatgttcttgcaaaaaaat-attatggtcatacaaactgaagagaacatcctcacttgatttttttaaagataac |
11481357 |
T |
|
| Q |
226 |
aaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
| | || |||| |||| |||||||||| |||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
11481358 |
acatat-ttacatttattatcttgttatctactaatgatttttgtgagatattgtttcttaagaat |
11481422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 7580684 - 7580858
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgga-gaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| ||||| |||||||| || |||||| |||| ||||| ||| | ||||| |||||||| ||| ||||| ||||||||||||| ||||| | |
|
|
| T |
7580684 |
catatgcatggagattctatcaaaatggacttaggatgatccaataattgttcatcattattcaagttatagcttggaagaatagaaatcaaacaaagca |
7580783 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccat |
205 |
Q |
| |
|
||| ||| ||||||||||| |||||| || ||| || | | ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7580784 |
attttgactttgagaaaggtttctcatgtccct-aatagaacattttggacatacaaagagaag-gaacatccccat |
7580858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 25538576 - 25538477
Alignment:
| Q |
191 |
agaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaa |
290 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| ||||| || ||||||| ||||| || |||||||| ||| |||||||| |||| |
|
|
| T |
25538576 |
agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgataaa-tgtttcatgagaa |
25538478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 260
Target Start/End: Complemental strand, 28257489 - 28257320
Alignment:
| Q |
89 |
attcaagatatgatttgg-agaatagaaatcaatcaaaggaattgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaag |
187 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||| | |||||| ||||||| ||| | |||| ||| |||||||| |
|
|
| T |
28257489 |
attcaagatatgatttgggagaatagaaatcaatcaaaggaattttga--ctgaaaaaagtttctcatgttcctacaaagaacattatggttatacaaag |
28257392 |
T |
|
| Q |
188 |
agaagaaaacatccccatttgatgttttaaaatg-taacaaaaatattacgattatcatcttgttatttactaa |
260 |
Q |
| |
|
|| || ||||||| | ||||||||| |||| ||||||| |||||| ||||| |||||||||| |||||| |
|
|
| T |
28257391 |
tgaggagaacatcctctcttgatgttt--caatgataacaaacgtattacaattattatcttgttatctactaa |
28257320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 9244009 - 9244130
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgga-gaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||| |||| ||||| || | || | |||||| |||||||||||| ||||||||||||| ||||| | |
|
|
| T |
9244009 |
catatgcatggagattctatcataaaatacttaggatgatccaaaaaattgccct----attcaaaatatgatttggaagaatagaaatcaaacaaagca |
9244104 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctca |
154 |
Q |
| |
|
||| ||| |||||||||| |||||| |
|
|
| T |
9244105 |
attttgacattgagaaaggtttctca |
9244130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 36434048 - 36433788
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||| ||| ||||||| ||||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36434048 |
catatgctttgagattctatcgtaaaatacttatgatggtccaagaatcctctatcactattcaagatatgatttggagaacagaaatcaatcaaaggaa |
36433949 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||| || ||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
36433948 |
ttttgactttgagaaaggtttctcatgttcctacaattatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaaagataacaaaa |
36433849 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
||||||| ||||| || ||||||| ||| | || |||||||| ||| |||||||| ||||| |
|
|
| T |
36433848 |
atattacaattattattttgttatctacaagtgtgttttgtgagaaa-tgtttcatgagaat |
36433788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 7786719 - 7786507
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
7786719 |
catatgcttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattcacgatatgatttgaaaaatagaaatcaatcaaaggaa |
7786620 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||||| |||| | ||||||| |||||||||| ||| ||||||||| |||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
7786619 |
ttttgactttgagaaaggtttcttatgttcctacaaatatcattctggtcatacaaagtgaagaaaatatcatcatttgatgttttaaaagataacaaaa |
7786520 |
T |
|
| Q |
230 |
atattacgattat |
242 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
7786519 |
atattacaattat |
7786507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 45 - 291
Target Start/End: Complemental strand, 46280296 - 46280051
Alignment:
| Q |
45 |
tctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaattgtgattttgagaa |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||| | |||||||||||||||||| ||| |||||||| |
|
|
| T |
46280296 |
tctatcataaaatacttatgatggtccaagaatcctctatcactattcaagatatgatttggagaacaaaaatcaatcaaaggaattttgactttgagaa |
46280197 |
T |
|
| Q |
145 |
aggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatca |
244 |
Q |
| |
|
| | |||||| ||||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
46280196 |
aagtttctcatgttcctacaaatatcattttggtcatacaaagtgaagaaaacatcataatttgatgttttaaaagataacaaaaatattacaattatta |
46280097 |
T |
|
| Q |
245 |
tcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
| ||||||| ||||| || |||||||| ||| |||||||| ||||| |
|
|
| T |
46280096 |
ttttgttatctactagtgtgttttgtgagaaa-tgtttcatgagaat |
46280051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 9308426 - 9308624
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||||||||||||||| || |||| ||||||| |||| |||||||||| |||||||||||||||||| |
|
|
| T |
9308426 |
catatgctttaagattctatcataaaatacttatgatggtccaagaatcctctatcactattcaaaatataatttggagaagagaaatcaatcaaaggaa |
9308525 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaa |
228 |
Q |
| |
|
|| ||| ||||||||||| || ||| ||||||| | |||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
9308526 |
ttttgactttgagaaaggtttttcatgttcctacatatatcattttggtcatacaaaatgaagaaaacatcctcatttaatgttttaaaagataacaaa |
9308624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 23484947 - 23485077
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgattt-ggagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||||||||||| |||| ||||||||||||| |||| | |||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
23484947 |
catatgcatgaagattctatcataaaagacttaggatgatccaagaatcttcaatcatttttcaagatataatttgggagaatagaaatcaataaaagga |
23485046 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttc |
159 |
Q |
| |
|
||| | | ||||||||||| |||||| |||| |
|
|
| T |
23485047 |
atttttactttgagaaaggtttctcatgttc |
23485077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 13329704 - 13329518
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttg-gagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | || || |||| ||||||||||||||||| | || ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
13329704 |
catatgcatgaagattctatcataataaacataggatgaaccaagaatcttccatcattttttaagatatgattcgcgagaatagaaatcaatcaaagga |
13329605 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt |
215 |
Q |
| |
|
||| | | ||||||||| | |||||| |||| || ||| | |||| ||| ||||||||| ||||| ||||||| || || ||||||| |
|
|
| T |
13329604 |
atttttactttgagaaaagattctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtttt |
13329518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 291
Target Start/End: Complemental strand, 13953456 - 13953242
Alignment:
| Q |
76 |
atcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaaggaattgtgattttgagaaaggcttctcacgttcctaaaaatatcattt |
174 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||| |||||| |||| || ||| | |||| |
|
|
| T |
13953456 |
atcttccatcatttttcaagatatgatttgggagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattc |
13953357 |
T |
|
| Q |
175 |
tggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaa |
274 |
Q |
| |
|
||| |||||||| ||||| |||||| || |||||||||| ||| ||||| || |||| |||| |||| ||||| ||||||||| |||||||| | |
|
|
| T |
13953356 |
tggttatacaaagtgaagagaacatcttcacttgatgtttttaaagataacacttat-ttacatttattatctcgttatctactaatgaattttgtgaga |
13953258 |
T |
|
| Q |
275 |
aattgtttcataagaat |
291 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
13953257 |
aa-tgtttcatgagaat |
13953242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 37919701 - 37919811
Alignment:
| Q |
180 |
atacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattg |
279 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||| ||||| || ||||||| || || || |||||||| ||| || |
|
|
| T |
37919701 |
atacaaaatgaagaacacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctattagtgtgttttgtgagaaa-tg |
37919799 |
T |
|
| Q |
280 |
tttcataagaat |
291 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
37919800 |
tttcatgagaat |
37919811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 4314422 - 4314180
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4314422 |
catatgcttggagattatatcataaaagacttatgatggtccaagaatcttatatcactattcaagatatgatttggagaatagaaatcaatcaaaagaa |
4314323 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| | | ||| ||||||| |||||| |||||| |||||||| | ||| ||| ||||| ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
4314322 |
tttttactttcagaaaggtttctcatattcctacaaatatcactctggtcattcaaagtgaagaaaacatcctcatttgatgttttaaaagataacaaaa |
4314223 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
|||| | ||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
4314222 |
atatcataattattatcttgttattcactaatgtgttttgtga |
4314180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 9735808 - 9736050
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
9735808 |
catatgcttggagattatatcataaaagacttatgatggtccaagaatcttacatcactattcaagatatgaattggagaatagaaatcaatcaaatgaa |
9735907 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||||| |||||| |||| || |||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
9735908 |
ttttgactttgagaaaggtttctcatgttcttacaaatatcattctcttcatacaaagtgaagaaaccatcctcatttgatgttttaaaagagaacaaaa |
9736007 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
|| |||| ||||| || |||| ||| ||||||| |||||||| |
|
|
| T |
9736008 |
attttacaattattattttgtcattcactaatgtgttttgtga |
9736050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 32816905 - 32817130
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgattt-ggagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
32816905 |
catatgcacggaggttctatcataaaagagttaggaagatccaagaatcttccatcattattcaagatatgatttgggagaatagaaatcaatcaaataa |
32817004 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcatt-ttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaa |
227 |
Q |
| |
|
||| | | ||||||||||| |||||| |||| || ||| | |||| |||| ||||||||| || |||||||| ||||||||||||||||| |||||| |
|
|
| T |
32817005 |
atttttaatttgagaaaggtttctcatgttcttacaaagaacattcttggtcatacaaagtcaaaaaaacatcatcatttgatgttttaaaagataacaa |
32817104 |
T |
|
| Q |
228 |
aaatattacgattatcatcttgttat |
253 |
Q |
| |
|
||||||||| ||||| || ||||||| |
|
|
| T |
32817105 |
aaatattacaattattattttgttat |
32817130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 2890654 - 2890825
Alignment:
| Q |
44 |
ttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgattt-ggagaatagaaatcaatcaaaggaattgtgattttgag |
142 |
Q |
| |
|
||||||||||||||||||| || | ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| | | |||||| |
|
|
| T |
2890654 |
ttctatcataaaagacttaggaagatccaaaaatcttccatcattattcaagatatgatttaggagaatagaaatcaatcaaatgaatttttactttgag |
2890753 |
T |
|
| Q |
143 |
aaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttt |
214 |
Q |
| |
|
||||| |||||| |||| || ||| | |||| ||| ||||||||| ||||| ||||||| || || |||||| |
|
|
| T |
2890754 |
aaaggtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgttt |
2890825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 30 - 234
Target Start/End: Complemental strand, 48712874 - 48712669
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgat-ttggagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | ||||| |||| ||||||||||| |||||| ||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
48712874 |
catatgcatgaagattctatcataataaacttaggatgatccaagaatctgccatcattattcaaaatatgatctgggagaatagaaatcaatcaaagga |
48712775 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaa |
228 |
Q |
| |
|
||| | | || |||||||| |||||| |||| || ||| | |||| | ||||||||| ||||| |||||| || |||||||||| ||| ||||||| |
|
|
| T |
48712774 |
atttttacttagagaaaggtttctcatgttcttacaaagaacattacgatcatacaaagtgaagagaacatcttcacttgatgtttttaaagataacaaa |
48712675 |
T |
|
| Q |
229 |
aatatt |
234 |
Q |
| |
|
||||| |
|
|
| T |
48712674 |
catatt |
48712669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 9418198 - 9418420
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9418198 |
catatgcttggagattctatcataaaatatttatgatggtccaagaatcttccatcac-attcaagatataatttggagaatagaaatcaatcaaaggaa |
9418296 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||| ||||||| || ||| ||||||| |||||||||| || |||| |||| ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
9418297 |
ttttgactttaagaaaggtttatcatgttcctacaaatatcattctgctcatataaagtgaagaaaacatcctcatttgatgttttaaaagataacaaaa |
9418396 |
T |
|
| Q |
230 |
atattacgattatcatcttgttat |
253 |
Q |
| |
|
||||||| ||||| || ||||||| |
|
|
| T |
9418397 |
atattacaattattattttgttat |
9418420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 7807312 - 7807571
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| ||||||||| ||||||| || |||| ||||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
7807312 |
catatgctttgagattctatcataaaatactcatgatggtctaagaatcctctatcactattcaatatatgatttggagaacaacaatcaatcaaaggaa |
7807411 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||| | |||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
7807412 |
ttttgactttgagaaaggtttctcatgttccaacaaatatcattttggtcatacaaagtgaagaagacatcctcatttgatgttttaaaagataacaaaa |
7807511 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
||||||| ||||| || ||||||| ||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
7807512 |
atattacaattattattttgttatctactagtgtgttttgtgaaaa--tgtttcatgagaat |
7807571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 7836735 - 7836995
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| ||||||||||||||||| || |||| ||||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
7836735 |
catatgctttgagattctatcataaaatactcatgatggtccaagaatcctctatcactattcaatatatgatttggagaacaacaatcaatcaaaggaa |
7836834 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||| | |||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
7836835 |
ttttgactttgagaaaggtttctcatgttccaacaaatatcattttggtcatacaaagtgaagaagacatcctcatttgatgttttaaaagataacaaaa |
7836934 |
T |
|
| Q |
230 |
atattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
||||||| ||||| || ||||||| |||| || |||||||| ||| |||||||| ||||| |
|
|
| T |
7836935 |
atattacaattattattttgttatctactggtgtgttttgtgagaaa-tgtttcatgagaat |
7836995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 24097478 - 24097242
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaa----tcaaa |
125 |
Q |
| |
|
||||||| || || |||||||||| |||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24097478 |
catatgcatgaagattctatcatacaagacttagcatgatccaagaatcatccatcactattcaagatatgatttggagaatagaaatcaattactcaaa |
24097379 |
T |
|
| Q |
126 |
ggaattgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaac |
225 |
Q |
| |
|
||||| ||| ||||||||| | | ||| ||||||| |||||| | | ||| |||| | || ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
24097378 |
tgaattttgactttgagaaaagtctttcatgttcctacaaatattaatctggtcatatagagtgaagaaaacatcctcatttgatgttttaaaagataac |
24097279 |
T |
|
| Q |
226 |
aaaaatattacgattatcatcttgttatttactaatg |
262 |
Q |
| |
|
||||||||||| ||||| || ||||||| ||||||| |
|
|
| T |
24097278 |
aaaaatattacaattattattttgttatccactaatg |
24097242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 12766222 - 12766465
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgattt-ggagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||||||||||| |||| |||||||||||||||||| | |||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
12766222 |
catatgcatgaagattctatcataaaagacttaggatgatccaagaatcttccatcatttttcaagatataatttgggagaatagaaatcaataaaagga |
12766321 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttccta-aaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaa |
227 |
Q |
| |
|
||| | | ||||||||||| |||||| |||| || |||| | ||||| || |||| |||| ||||| ||||||| || || ||||||||||| ||||| |
|
|
| T |
12766322 |
atttttactttgagaaaggtttctcatgttcttacaaaagaacatttcggtcataaaaagtgaagagaacatcctcactttatgttttaaaagataacac |
12766421 |
T |
|
| Q |
228 |
aaatattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
| || |||| |||| |||||||||| |||||||| |||||||| |
|
|
| T |
12766422 |
atat-ttacatttattatcttgttatctactaatgtgttttgtga |
12766465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 291
Target Start/End: Original strand, 988048 - 988210
Alignment:
| Q |
128 |
aattgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaa |
227 |
Q |
| |
|
|||| ||| ||||||||||| |||||| ||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
988048 |
aattttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaaagataacaa |
988147 |
T |
|
| Q |
228 |
aaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
||||||||| ||||| || ||||||| ||||| || |||||||| ||| |||||||| ||||| |
|
|
| T |
988148 |
aaatattacaattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgagaat |
988210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 20028737 - 20028923
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | || | ||||||||||||||||||||||| | || ||||||||||| || | |||||||||||||||||||| |
|
|
| T |
20028737 |
catatgcatgaagattctatcataataaacaaaggatggtccaagaatcttccatcattttttaagatatgattcgggaaaatagaaatcaatcaaagga |
20028836 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt |
215 |
Q |
| |
|
||| | | |||||||| | |||||| |||| |||||| | |||| ||| ||||||||| ||||| ||||||| || || ||||||| |
|
|
| T |
20028837 |
atttttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtttt |
20028923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 272
Target Start/End: Complemental strand, 31576672 - 31576430
Alignment:
| Q |
33 |
atgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattc---aagatatgatttgg-agaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || ||||||||||||||| ||| |||| | ||||||||||||||| | || |||||||||||||| ||||||||||||||||||| || |
|
|
| T |
31576672 |
atgcttgaagattctatcataaaagatttaggatgattgaagaatcttccatcatttttttaaaagatatgatttgggagaatagaaatcaatcaaatga |
31576573 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaa |
228 |
Q |
| |
|
||| | | ||||||| ||| |||||| ||| || ||| | |||| ||| ||||||||| ||||| ||||||| || |||||||||| ||| ||||| | |
|
|
| T |
31576572 |
atttttactttgagagaggtttctcatattcttacaaagaacattctggtcatacaaagtgaagagaacatcctcacttgatgtttttaaagataacaca |
31576473 |
T |
|
| Q |
229 |
aatattacgattatcatcttgttatttactaatgatttttgtga |
272 |
Q |
| |
|
|| |||| |||| |||||||||| |||||||| |||||||| |
|
|
| T |
31576472 |
tat-ttacatttattatcttgttatctactaatgtgttttgtga |
31576430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 20036498 - 20036684
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatt-tggagaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | || || ||||||| ||||||||||||||| | || ||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
20036498 |
catatgcatgaagattctatcataataaacataggatggtcaaagaatcttccatcattttttaagatatgattcgggaaaatagaaatcaatcaaagga |
20036597 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt |
215 |
Q |
| |
|
| | | | |||||||| | |||||| |||| |||||| | |||| ||| ||||||||| ||||| ||||||| || || ||||||| |
|
|
| T |
20036598 |
aattttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtttt |
20036684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 42713969 - 42713782
Alignment:
| Q |
30 |
catatgcttggaggttctatcataa-aagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaagg |
127 |
Q |
| |
|
||||||| || || ||||||||||| || || || |||| |||||||||||||||||| | || ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
42713969 |
catatgcatgaagattctatcataataaaacataagatgatccaagaatcttccatcattttttaagatatgattcgggagaatagaaatcaatcaaagg |
42713870 |
T |
|
| Q |
128 |
aattgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt |
215 |
Q |
| |
|
|||| | | ||||||||| | |||||| |||| || ||| | ||| ||| ||| ||||| ||||| ||||||| || || ||||||| |
|
|
| T |
42713869 |
aatttttactttgagaaaagtttctcatgttcttacaaagaacatactggtcattcaaagtgaagagaacatcctcactttatgtttt |
42713782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 296
Target Start/End: Original strand, 24268665 - 24268918
Alignment:
| Q |
44 |
ttctatcataaaagacttatgatggtccaagaatcttccatcaatattc--aagatatgatttgg-agaatagaaatcaatcaaaggaattgtgattttg |
140 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||||||||| | || ||||||||||| || ||||||||||||||||||| ||||| | | |||| |
|
|
| T |
24268665 |
ttctatcgtaaaagatttaggatgatcgaagaatcttccatcatttttttaaagatatgattcgggagaatagaaatcaatcaaacgaatttttactttg |
24268764 |
T |
|
| Q |
141 |
agaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgatt |
240 |
Q |
| |
|
||| ||| |||||| | | || ||| | |||| ||| || |||||| ||||| ||||||| || |||||||||| ||| ||||| | || |||| || |
|
|
| T |
24268765 |
agagaggtttctcatatccttacaaagaacattctggtcagacaaagtgaagagaacatcctcacttgatgtttttaaagataacacatat-ttacattt |
24268863 |
T |
|
| Q |
241 |
atcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaataatct |
296 |
Q |
| |
|
|| |||||||||| |||||||| |||||||| ||| |||||||| ||||| |||| |
|
|
| T |
24268864 |
attatcttgttatctactaatgtgttttgtgataaa-tgtttcatgagaatgatct |
24268918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 62 - 291
Target Start/End: Original strand, 14272066 - 14272306
Alignment:
| Q |
62 |
atgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaattgtgattttg-----------agaaaggctt |
150 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| || |
|
|
| T |
14272066 |
atgatggtccaagaatcttcaatcactattcaagatatgatttggagaatagaaatcaatcaaaggaattttgactttgaaattcctttgagaaaggttt |
14272165 |
T |
|
| Q |
151 |
ctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgt |
250 |
Q |
| |
|
||| ||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| || |||| |
|
|
| T |
14272166 |
atcatgttcctacaaatatcattttggtcatacaaagtgaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgt |
14272265 |
T |
|
| Q |
251 |
tatttactaatgatttttgtgaaaaattgtttcataagaat |
291 |
Q |
| |
|
||| || | || |||||||| || ||||||||| ||||| |
|
|
| T |
14272266 |
tatctattgattcgttttgtgagaatttgtttcatgagaat |
14272306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 29910413 - 29910636
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||| |||| || ||||||||||||||| ||| |||| ||||| |||||||||||| ||||||| |||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
29910413 |
catatacttgaagattctatcataaaagatttaggatgatccaaaaatcttccatcactattcaaaatatgatttgtagaatagaaataaatcacaggaa |
29910512 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaa |
229 |
Q |
| |
|
|| ||| ||||||||| | || ||| ||||||| ||||||||| ||| |||||||| ||||||||| ||| ||||||||| ||||||| ||| |||| |
|
|
| T |
29910513 |
ttttgactttgagaaaagtttatcatgttcctaccaatatcattctggtcatacaaaaagaagaaaatatcttcatttgatgatttaaaagataaaaaaa |
29910612 |
T |
|
| Q |
230 |
atattacgattatcatcttgttat |
253 |
Q |
| |
|
||||||| ||||| || ||||||| |
|
|
| T |
29910613 |
atattacaattattattttgttat |
29910636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 18577741 - 18577832
Alignment:
| Q |
38 |
tggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||| || ||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18577741 |
tggagattatatcataaaagacttatgatggtataggaatcttccatcactattaaagatatgatttggagaatagaaatcaatcaaaggaa |
18577832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 35876030 - 35876202
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | || || |||| |||||||||||||||||| | || ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
35876030 |
catatgcatgaagattctatcataataaacataggatgatccaagaatcttccatcattttttaagatatgattcgggagaatagaaatcaatcaaagga |
35876129 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatcc |
201 |
Q |
| |
|
||| | | ||||||||| | |||||| |||| || ||| | |||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
35876130 |
atttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcc |
35876202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 35883519 - 35883691
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | || || |||| |||||||||||||||||| | || ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
35883519 |
catatgcatgaagattctatcataataaacataggatgatccaagaatcttccatcattttttaagatatgattcgggagaatagaaatcaatcaaagga |
35883618 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatcc |
201 |
Q |
| |
|
||| | | ||||||||| | |||||| |||| || ||| | |||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
35883619 |
atttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcc |
35883691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 36723232 - 36723404
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | || || |||| |||||||||||||||||| | || ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
36723232 |
catatgcatgaagattctatcataataaacataggatgatccaagaatcttccatcattttttaagatatgattcgggagaatagaaatcaatcaaagga |
36723331 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatcc |
201 |
Q |
| |
|
||| | | ||||||||| | |||||| |||| || ||| | |||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
36723332 |
atttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcc |
36723404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 18577840 - 18577941
Alignment:
| Q |
152 |
tcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgtt |
251 |
Q |
| |
|
||| ||||||| |||||||||| || || ||||| |||||||||| || ||||||||||||||||| ||| ||||||||||| ||||| || ||||| |
|
|
| T |
18577840 |
tcatgttcctacaaatatcattctgattatgcaaagtgaagaaaacaccctcatttgatgttttaaaagataagaaaaatattacaattattattttgtt |
18577939 |
T |
|
| Q |
252 |
at |
253 |
Q |
| |
|
|| |
|
|
| T |
18577940 |
at |
18577941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 14097665 - 14097789
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14097665 |
catatgcttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattcaagatatgatttggagaatagaaatcaatcaaagaaa |
14097764 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctca |
154 |
Q |
| |
|
|| ||| ||| |||||| |||||| |
|
|
| T |
14097765 |
ttttgactttccgaaaggtttctca |
14097789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 2850432 - 2850617
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttggagaatagaaatcaatcaaaggaa |
129 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||| |||| || ||||||||||||||| | || |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
2850432 |
catatgcttgaagattctatcataaaagatttaagatgatcgaagaatcttccatcattttttaagatatggttgggagaatagaaatcaatcaaaggaa |
2850531 |
T |
|
| Q |
130 |
ttgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt |
215 |
Q |
| |
|
| | | ||||||||||| ||||||||||| || ||| | |||| ||| |||||||| ||||| |||||||||| | |||||||| |
|
|
| T |
2850532 |
tatttactttgagaaaggtttctcacgttcttacaaagaacattatggttatacaaagtgaagagaacatccccactcgatgtttt |
2850617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 17513838 - 17513686
Alignment:
| Q |
64 |
gatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaaggaattgtgattttgagaaaggcttctcacgttccta |
162 |
Q |
| |
|
|||| |||||||||||||||||| | || ||||||||||| || |||||||||||||||||||| |||| | | ||||||||||| |||||| |||| || |
|
|
| T |
17513838 |
gatgatccaagaatcttccatcattttttaagatatgattcgggagaatagaaatcaatcaaagaaatttttactttgagaaaggtttctcatgttctta |
17513739 |
T |
|
| Q |
163 |
aaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt |
215 |
Q |
| |
|
||| | |||| ||| ||||||||| ||||| |||||| || || ||||||| |
|
|
| T |
17513738 |
caaagaacattctggtcatacaaagtgaagagtacatcctcactttatgtttt |
17513686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 14099909 - 14100023
Alignment:
| Q |
159 |
cctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt-aaaatgtaacaaaaatattacgattatcatcttgttatttac |
257 |
Q |
| |
|
|||| |||||||||| ||| ||||||||| |||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| || || ||||| || |
|
|
| T |
14099909 |
cctacaaatatcattatggtcatacaaagtgaagaaaacatcttcatttgatgttttcaaaagataacaaaaatattacaattattatatttttattcac |
14100008 |
T |
|
| Q |
258 |
taatgatttttgtga |
272 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
14100009 |
taatgtcttttgtga |
14100023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 667 - 853
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaagga |
128 |
Q |
| |
|
||||||| || || ||||||||||| | || | ||||||||||||||||||||||| | || ||||||||||| || | |||||||||||||||||||| |
|
|
| T |
667 |
catatgcatgaagattctatcataataaacaaaggatggtccaagaatcttccatcattttttaagatatgattcgggaaaatagaaatcaatcaaagga |
766 |
T |
|
| Q |
129 |
attgtgattttgagaaaggcttctcacgttcctaaaaatatcattttggacatacaaagagaagaaaacatccccatttgatgtttt |
215 |
Q |
| |
|
||| | | |||||||| | |||||| |||| |||||| | |||| ||| ||||||||| ||||| ||||||| || || ||||||| |
|
|
| T |
767 |
atttttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtttt |
853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 291
Target Start/End: Complemental strand, 5596 - 5382
Alignment:
| Q |
76 |
atcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaaggaattgtgattttgagaaaggcttctcacgttcctaaaaatatcattt |
174 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||| |||||| |||| || ||| | |||| |
|
|
| T |
5596 |
atcttccatcatttttcaagatatgatttgggagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattc |
5497 |
T |
|
| Q |
175 |
tggacatacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaa |
274 |
Q |
| |
|
||| |||||||| ||||| |||||| || |||||||||| ||| ||||| || |||| |||| |||| ||||| ||||||||| |||||||| | |
|
|
| T |
5496 |
tggttatacaaagtgaagagaacatcttcacttgatgtttttaaagataacacttat-ttacatttattatctcgttatctactaatgaattttgtgaga |
5398 |
T |
|
| Q |
275 |
aattgtttcataagaat |
291 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
5397 |
aa-tgtttcatgagaat |
5382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0959 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0959
Description:
Target: scaffold0959; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 2825 - 2921
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgatttgg-agaatagaaatcaatcaaa |
125 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||||| |||| ||||||| | |||||||| ||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
2825 |
catatgcatggagattctatcgaaaaatacttaggatgatccaagagttttccatcactattcaagatatgatttggaagaatacaaatcaaacaaa |
2921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 3517 - 3613
Alignment:
| Q |
30 |
catatgcttggaggttctatcataaaagacttatgatggtccaagaatcttccatcaatattcaagatatgattt-ggagaatagaaatcaatcaaa |
125 |
Q |
| |
|
|||||||| | || ||||||||||||||||||| |||| || ||||||||| ||||| || |||| ||||||||| ||||| |||| |||||||||| |
|
|
| T |
3517 |
catatgctcgaagattctatcataaaagacttaggatgatcaaagaatctttcatcattactcaaaatatgatttgggagagtagagatcaatcaaa |
3613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University