View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1403_low_23 (Length: 296)
Name: NF1403_low_23
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_23 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 29279735 - 29279886
Alignment:
| Q |
142 |
tgtcaaaaccaccttaacaaacaatcgaaaatgcaggaaaaccattcatataaaagacacggggatcc-gactttcttcccaaaaaccaattccaagata |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29279735 |
tgtcaaaaccaccttaacaaacaatcgaaaacgcaggaaaaccattcata--aaagacacggggatcccgactttcttcccaaaaaccaattccaagata |
29279832 |
T |
|
| Q |
241 |
aactctttatccagaattcacaacctcaagcccttcagacaccttttgaataaaaa |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29279833 |
aactctttatccag--ttcacaacctcaagcccttcagacaccttttgaacaaaaa |
29279886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 29279627 - 29279685
Alignment:
| Q |
142 |
tgtcaaaaccaccttaacaaacaatcgaaaatgcaggaaaaccattcatataaaagaca |
200 |
Q |
| |
|
||||||| | ||||||||||||||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
29279627 |
tgtcaaacctaccttaacaaacaatcgaaaacgcggaaaaaccattcataaaaaagaca |
29279685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University