View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_24 (Length: 292)
Name: NF1403_low_24
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 13585523 - 13585352
Alignment:
| Q |
56 |
aatatatacaacataaactaaaaactattaatagggtagcgtttgaatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaa |
155 |
Q |
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| T |
13585523 |
aatatatacaacataaattaaaaactattaatagggttgcgtttgaatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaa |
13585424 |
T |
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| Q |
156 |
cacatctgcataat------aatacgtgaataaaacaaaaattagtatagtgtatcaaaaactatgaagcacg |
222 |
Q |
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| T |
13585423 |
cacatctgcataataataataataagtgaataaaa-agaaatcagtataatgtatcaaaaactatgaagcacg |
13585352 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 13579941 - 13579868
Alignment:
| Q |
96 |
gtttgaatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcataat |
169 |
Q |
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| T |
13579941 |
gtttgaatttaatacctgtgaccacaaggagtggtacttggctcaaagcatatctctaaacaaatctgcgtaat |
13579868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 6632271 - 6632206
Alignment:
| Q |
101 |
aatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcat |
166 |
Q |
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| T |
6632271 |
aatttaatacctgtgacaacaaggagtggtacttggctcaaagcatatctctaaacaaatctgcat |
6632206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 36893542 - 36893475
Alignment:
| Q |
101 |
aatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcataa |
168 |
Q |
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| T |
36893542 |
aatttaatatctgtgacaacaaggggtggtacttggctcaaagcatatctctaaacaaatctgcataa |
36893475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 32092142 - 32092075
Alignment:
| Q |
101 |
aatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcataa |
168 |
Q |
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| T |
32092142 |
aatttaatacctgtgacaacaaggagtggtacttgactcaaagcatatctctaaacaaatctgcataa |
32092075 |
T |
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