View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_26 (Length: 278)
Name: NF1403_low_26
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 29651918 - 29652123
Alignment:
| Q |
36 |
gagatgaacaagaagatatgacagttacccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651918 |
gagatgaacaagaagatatgacagttacccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
29652017 |
T |
|
| Q |
136 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29652018 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
29652117 |
T |
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| Q |
236 |
ttcttt |
241 |
Q |
| |
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|||||| |
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| T |
29652118 |
ttcttt |
29652123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 29633996 - 29634201
Alignment:
| Q |
36 |
gagatgaacaagaagatatgacagttacccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
135 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29633996 |
gagatgaacaagaagatatgacagttgcccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
29634095 |
T |
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| Q |
136 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29634096 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
29634195 |
T |
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| Q |
236 |
ttcttt |
241 |
Q |
| |
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|||||| |
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| T |
29634196 |
ttcttt |
29634201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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