View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_27 (Length: 276)
Name: NF1403_low_27
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 42789066 - 42788871
Alignment:
| Q |
43 |
aaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaattt |
142 |
Q |
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| T |
42789066 |
aaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaattt |
42788967 |
T |
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| Q |
143 |
gagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttc |
238 |
Q |
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| T |
42788966 |
gagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttc |
42788871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 42798604 - 42798409
Alignment:
| Q |
43 |
aaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaattt |
142 |
Q |
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| T |
42798604 |
aaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaattt |
42798505 |
T |
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| Q |
143 |
gagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttc |
238 |
Q |
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| T |
42798504 |
gagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttc |
42798409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 34566739 - 34566633
Alignment:
| Q |
43 |
aaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaattt |
142 |
Q |
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||||||| | ||| |||||||||||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||| |||||||||||||||||| | |
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| T |
34566739 |
aaagattaaggaaaagatatgaaatgatcattgaaggtttgaaaagtgctggaattgaatgcttgaaaggtaatgcagggttgttttgttggatgaatat |
34566640 |
T |
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| Q |
143 |
gagtcca |
149 |
Q |
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| T |
34566639 |
gagtcca |
34566633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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