View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_29 (Length: 274)
Name: NF1403_low_29
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 3904329 - 3904129
Alignment:
| Q |
39 |
aacacccatctttctgcatctccttcctcggatacaattaagttagcttcagttaagggatctttgcctccttcctcaagcataaaagatgttactcctg |
138 |
Q |
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| T |
3904329 |
aacacccatctttctgcatcaccttcctcggatacaattaagttagcttcagttaagggatctttgcctccttcctcaagcataaaagatgttactcctg |
3904230 |
T |
|
| Q |
139 |
gtcctcctgcctccagttcaggcttacaaagtacttttgttgggactgattcgcagcttgacgcaaacaacgtgacagtaccacctgctcagcaatcttc |
238 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904229 |
gtcctcctgcctccagttcaggcttacagagtacttttgttgggactgattcgcagcttgacgcaaacaacgtgacagtaccacctgctcagcaatcttc |
3904130 |
T |
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| Q |
239 |
a |
239 |
Q |
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| |
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| T |
3904129 |
a |
3904129 |
T |
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