View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_30 (Length: 271)
Name: NF1403_low_30
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 13747125 - 13747314
Alignment:
| Q |
50 |
acaaaatatgaaactaagaaaatattctacaaacgattctgatccctggcagaggcagagttgaacttcctatgcattcgaggggtcatgtaggagaata |
149 |
Q |
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| T |
13747125 |
acaaaatatgaaactaagaaaatattctacaaacgactctgatccctggcagaggcagagttgaacttcctatgcattcgaggggtcatataggagaata |
13747224 |
T |
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| Q |
150 |
tggattgtttctttggtttcacaccaaagataaatgtcctgagaggaaccctggcttgagtttctgactgtcttaggtctccactttctt |
239 |
Q |
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| T |
13747225 |
tggattgtttctttggtttcacaccaaagataaatgtcctgagaggaaccctggctttagtttctgactgtcttaggtctccactttctt |
13747314 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 28751277 - 28751321
Alignment:
| Q |
154 |
ttgtttctttggtttcacaccaaagataaatgtcctgagaggaac |
198 |
Q |
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| T |
28751277 |
ttgtttctttggtttgactccaaagataaatgaccttagaggaac |
28751321 |
T |
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