View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1403_low_4 (Length: 536)

Name: NF1403_low_4
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1403_low_4
NF1403_low_4
[»] chr2 (9 HSPs)
chr2 (212-454)||(16705915-16706157)
chr2 (305-452)||(20147297-20147444)
chr2 (66-132)||(16705588-16705654)
chr2 (399-458)||(32734066-32734125)
chr2 (399-458)||(42241974-42242033)
chr2 (66-132)||(16707546-16707608)
chr2 (235-296)||(16707650-16707711)
chr2 (399-453)||(29110446-29110500)
chr2 (315-416)||(14414066-14414167)
[»] chr3 (7 HSPs)
chr3 (402-454)||(8634261-8634313)
chr3 (399-458)||(37280735-37280794)
chr3 (399-454)||(53561185-53561240)
chr3 (406-452)||(36722233-36722279)
chr3 (424-458)||(7953517-7953551)
chr3 (402-455)||(39417820-39417873)
chr3 (288-344)||(45004513-45004569)
[»] chr4 (11 HSPs)
chr4 (347-458)||(24605978-24606089)
chr4 (399-458)||(49063272-49063331)
chr4 (398-458)||(14331572-14331632)
chr4 (399-454)||(21710832-21710887)
chr4 (314-411)||(16935497-16935594)
chr4 (400-453)||(31825742-31825795)
chr4 (400-458)||(20779814-20779872)
chr4 (400-458)||(32938742-32938800)
chr4 (400-458)||(27758919-27758977)
chr4 (360-418)||(49285567-49285625)
chr4 (406-454)||(38132917-38132965)
[»] chr7 (4 HSPs)
chr7 (400-458)||(39477912-39477970)
chr7 (399-458)||(21615618-21615677)
chr7 (399-458)||(18236851-18236910)
chr7 (302-416)||(47441570-47441684)
[»] chr1 (7 HSPs)
chr1 (399-454)||(18169312-18169367)
chr1 (401-452)||(46925050-46925101)
chr1 (402-455)||(5764492-5764545)
chr1 (399-452)||(3657928-3657981)
chr1 (400-458)||(6086600-6086659)
chr1 (400-458)||(48569283-48569341)
chr1 (400-458)||(49599711-49599769)
[»] chr8 (3 HSPs)
chr8 (399-454)||(43692424-43692479)
chr8 (399-458)||(40414019-40414078)
chr8 (286-411)||(9512440-9512566)
[»] scaffold0004 (1 HSPs)
scaffold0004 (402-458)||(39206-39262)
[»] chr5 (4 HSPs)
chr5 (399-458)||(7081560-7081619)
chr5 (309-408)||(10397863-10397962)
chr5 (400-450)||(41758119-41758169)
chr5 (364-458)||(33369877-33369970)
[»] chr6 (1 HSPs)
chr6 (359-432)||(4286456-4286529)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 212 - 454
Target Start/End: Original strand, 16705915 - 16706157
Alignment:
Q  212 aaaagaaggcgaagagattgggtttatctaatataaaccttctaaaggagttcaatggtggactcctacctttatgaattctgctttcctcctgcacttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  || |||||||    
T  16705915 aaaagaaggcgaagagattgggtttatctaatataaaccttctaaaggagttcaatggtggactcctacctttttgaattctgctttctcccagcacttt 16706014  T
Q  312 ttactcgcgctcagcagccttgcccagaataccattgcgctaattatgtaatgcaagtgttaaactctacgctacttaattaacgttgcgttagttaact 411  Q
    || ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||    
T  16706015 ttgctcgcgctcagcagccttgcctaaaataccattgcgctaattatgtaatgtaagtgttaaactctacgctacttaactaatgttgtgttagttaact 16706114  T
Q  412 tacgctacgtgttgttttaaacaaggcagaacacctcatttct 454  Q
     || | |||||||||||||||||||||||||||||||||||||    
T  16706115 cacaccacgtgttgttttaaacaaggcagaacacctcatttct 16706157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 305 - 452
Target Start/End: Original strand, 20147297 - 20147444
Alignment:
Q  305 gcactttttactcgcgctcagcagccttgcccagaataccattgcgctaattatgtaatgcaagtgttaaactctacgctacttaattaacgttgcgtta 404  Q
    ||||||||| ||||||| ||||||||||||||| ||| ||  |||| || ||| ||||  ||||||||||||||| | |||||||| ||||| ||| |||    
T  20147297 gcactttttgctcgcgcccagcagccttgcccaaaatgcccatgcgttagttaagtaacacaagtgttaaactctgcactacttaactaacgctgcctta 20147396  T
Q  405 gttaacttacgctacgtgttgttttaaacaaggcagaacacctcattt 452  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||    
T  20147397 gttaactcacactaagtgttgttttaaacaaggcagaacacctcattt 20147444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 16705588 - 16705654
Alignment:
Q  66 ggatgaaatattgaatgaattttattgtaatagatggatcctacataatagtctatttataatccgc 132  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16705588 ggatgaaatattgaatgaattttattgtaatagatggatcatacataatagtctatttataatccgc 16705654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 32734066 - 32734125
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||    
T  32734066 gcgttagttaactcacgctacgtgctgtcttaaacaaggcagaacacctcatttcctcat 32734125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 42242033 - 42241974
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||||||||||  |||||||||||| |||||||||||| ||||||||||||| ||||    
T  42242033 gcgttagttaacttgtgctacgtgttgtcttaaacaaggcaaaacacctcatttcctcat 42241974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 16707546 - 16707608
Alignment:
Q  66 ggatgaaatattgaatgaattttattgtaatagatggatcctacataatagtctatttataatccgc 132  Q
    ||||||| |||| ||||||||||||||||||||||||||    ||||||||||||||| ||||||||    
T  16707546 ggatgaagtatttaatgaattttattgtaatagatggat----cataatagtctatttttaatccgc 16707608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 16707650 - 16707711
Alignment:
Q  235 ttatctaatataaaccttctaaaggagttcaatggtggactcctacctttatgaattctgct 296  Q
    ||||||||||||||||||||||||||||||||  |||||| | ||||||| |||| ||||||    
T  16707650 ttatctaatataaaccttctaaaggagttcaacagtggacgcatacctttttgaaatctgct 16707711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 29110446 - 29110500
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttc 453  Q
    ||||||||||||| || ||||| | ||| |||||||| |||||||||||||||||    
T  29110446 gcgttagttaactcacactacgagctgtcttaaacaatgcagaacacctcatttc 29110500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 14414167 - 14414066
Alignment:
Q  315 ctcgcgctcagcagccttgcccagaataccattgcgctaattatgtaatgcaagtgttaaactctacgctacttaattaacgttgcgttagttaacttac 414  Q
    ||||||| | ||||| ||||||| |||||  || || || ||| |||| | ||||||||||| || |||||||||| ||||| ||||| |||||||| ||    
T  14414167 ctcgcgccctgcagcgttgcccaaaatactcttacgttagttaagtaacgtaagtgttaaacactgcgctacttaagtaacgctgcgtgagttaactaac 14414068  T
Q  415 gc 416  Q
    ||    
T  14414067 gc 14414066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 8634313 - 8634261
Alignment:
Q  402 ttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttct 454  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8634313 ttagttaactcacgctacgtgttgttttaaacaaggcagaacacctcatttct 8634261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 37280735 - 37280794
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||||||||| |||||| ||||| | |||||||||||||||||||||||||| ||||    
T  37280735 gcgttagttaactcacgctatgtgttatcttaaacaaggcagaacacctcatttcctcat 37280794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 53561185 - 53561240
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttct 454  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||| ||||||||    
T  53561185 gcgttagttaacttgcgctacgtgttgtcttaaataaggcagaacacttcatttct 53561240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 36722279 - 36722233
Alignment:
Q  406 ttaacttacgctacgtgttgttttaaacaaggcagaacacctcattt 452  Q
    |||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  36722279 ttaactcacgctgcgtgttgttttaaacaaggcagaacacatcattt 36722233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 7953517 - 7953551
Alignment:
Q  424 tgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||||||||||||||||||||| ||||    
T  7953517 tgttttaaacaaggcagaacacctcatttcctcat 7953551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 39417873 - 39417820
Alignment:
Q  402 ttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttctt 455  Q
    |||||||| | |||||||||| ||| |||||||||||||| | |||||||||||    
T  39417873 ttagttaagtcacgctacgtgctgtcttaaacaaggcagagctcctcatttctt 39417820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 45004569 - 45004513
Alignment:
Q  288 aattctgctttcctcctgcactttttactcgcgctcagcagccttgcccagaatacc 344  Q
    ||||||||| | |||||||||||||  ||||||||| |||||||||| || ||||||    
T  45004569 aattctgctcttctcctgcacttttcgctcgcgctctgcagccttgctcaaaatacc 45004513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 458
Target Start/End: Original strand, 24605978 - 24606089
Alignment:
Q  347 tgcgctaattatgtaatgcaagtgttaaactctacgctacttaattaacgttgcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacc 446  Q
    |||| |||||| ||| |||||||||||| ||||  || |||||| ||||| || ||||||||||| ||||||| || | ||||||| |||||||||||||    
T  24605978 tgcgttaattaagtagtgcaagtgttaatctctgtgcaacttaactaacgctgtgttagttaactcacgctacatgctattttaaataaggcagaacacc 24606077  T
Q  447 tcatttcttcat 458  Q
    ||||||| ||||    
T  24606078 tcatttcctcat 24606089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 49063272 - 49063331
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||    
T  49063272 gcgttagttaacttgcgctatgtgttgtcttaaacaaggcagaacacctcatttcctcat 49063331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 14331632 - 14331572
Alignment:
Q  398 tgcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||||| |||||||||| ||| |||||||||| ||||||||||||||| ||||    
T  14331632 tgcgttagttaactcacgctacgtgctgtcttaaacaaggtagaacacctcatttcctcat 14331572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 21710832 - 21710887
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttct 454  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||    
T  21710832 gcgttagttaacttgcactacgtgttgtcttaaacaaggcagaacacctaatttct 21710887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 411
Target Start/End: Original strand, 16935497 - 16935594
Alignment:
Q  314 actcgcgctcagcagccttgcccagaataccattgcgctaattatgtaatgcaagtgttaaactctacgctacttaattaacgttgcgttagttaact 411  Q
    |||||||| | ||||||||| |||  ||||| |||||||| |||  ||| ||||||||||||||||  ||||||||| ||||| ||||| ||||||||    
T  16935497 actcgcgccctgcagccttgtccaagatacccttgcgctagttaaataacgcaagtgttaaactctgtgctacttaactaacgctgcgtgagttaact 16935594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 31825795 - 31825742
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttc 453  Q
    |||||||||| | |||||||||| ||| ||||||||||||||||||||||||||    
T  31825795 cgttagttaagtcacgctacgtgctgtcttaaacaaggcagaacacctcatttc 31825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 20779872 - 20779814
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||| |||||||||| ||| |||||||||||| || |||||||||| ||||    
T  20779872 cgttagttaactcacgctacgtgctgtcttaaacaaggcaaaatacctcatttcctcat 20779814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 32938800 - 32938742
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||| | |||||||| ||| |||||||||||| ||||||||||||| ||||    
T  32938800 cgttagttaactcatgctacgtgctgtcttaaacaaggcaaaacacctcatttcctcat 32938742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 27758919 - 27758977
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||| | ||||||| |||||| ||||| |||||||| ||||||||||| ||||    
T  27758919 cgttagttaagtcacgctacatgttgtcttaaataaggcagagcacctcatttcctcat 27758977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 49285567 - 49285625
Alignment:
Q  360 taatgcaagtgttaaactctacgctacttaattaacgttgcgttagttaacttacgcta 418  Q
    |||||||||||| ||||| | ||||| |||| ||||||||||| |||||||| ||||||    
T  49285567 taatgcaagtgtaaaactatgcgctagttaagtaacgttgcgtgagttaactcacgcta 49285625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 38132965 - 38132917
Alignment:
Q  406 ttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttct 454  Q
    |||||| |||||||||| | | |||||||||||||| ||||||||||||    
T  38132965 ttaactaacgctacgtgctatcttaaacaaggcagagcacctcatttct 38132917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 39477970 - 39477912
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  39477970 cgttagttaacttgcgctacgtgttgtcttaaacaaggcagaacacctcatttcctcat 39477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 21615677 - 21615618
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||    
T  21615677 gcgttagttaactcacgctaagtgttgttttaaacaaggtagaacacctcatttcctcat 21615618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 18236851 - 18236910
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||||||| | |||||||||| | | |||||||||||||| |||||| |||||||||    
T  18236851 gcgttagttaagtcacgctacgtgctatcttaaacaaggcagagcacctcctttcttcat 18236910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 416
Target Start/End: Original strand, 47441570 - 47441684
Alignment:
Q  302 cctgcactttttactcgcgctcagcagccttgcccagaataccattgcgctaattatgtaatgcaagtgttaaactctacgctacttaattaacgttgcg 401  Q
    |||||||||||| ||||||  | | ||||||||| | ||| ||  |||| || ||| |||| |||||||||||||||| || ||||||| ||| | ||||    
T  47441570 cctgcactttttgctcgcgtcctgtagccttgccaaaaatgcctctgcgttagttaagtaacgcaagtgttaaactctgcgttacttaactaaagctgcg 47441669  T
Q  402 ttagttaacttacgc 416  Q
    | |||||||| ||||    
T  47441670 tgagttaactcacgc 47441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 18169312 - 18169367
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttct 454  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  18169312 gcgttagttaactcacgctacgtgatgtcttaaacaaggcagaacacctcatttct 18169367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 452
Target Start/End: Complemental strand, 46925101 - 46925050
Alignment:
Q  401 gttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcattt 452  Q
    |||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  46925101 gttagttaacttgcgctacatgttgtcttaaacaaggcagaacacctcattt 46925050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 5764492 - 5764545
Alignment:
Q  402 ttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttctt 455  Q
    |||||||| | |||||||||| ||||||||| ||||||||||||||||||||||    
T  5764492 ttagttaagtaacgctacgtgctgttttaaataaggcagaacacctcatttctt 5764545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 3657928 - 3657981
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcattt 452  Q
    |||||||||||||||| ||||||| ||| ||||||||||  |||||||||||||    
T  3657928 gcgttagttaacttacactacgtgctgtcttaaacaaggttgaacacctcattt 3657981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 6086659 - 6086600
Alignment:
Q  400 cgttagttaacttacgctacgtgttgtttt-aaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||| | ||||| ||||||||| |||||||| ||||||||||||||| ||||    
T  6086659 cgttagttaactcatgctacatgttgtttttaaacaaggtagaacacctcatttcctcat 6086600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 48569341 - 48569283
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||| | ||||| |||| ||| |||||||||||||| ||||||||||| ||||    
T  48569341 cgttagttaagtcacgctgcgtgctgtcttaaacaaggcagagcacctcatttcctcat 48569283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 49599769 - 49599711
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||| | | ||||| |||||| |||||||||||||| ||||||||||| ||||    
T  49599769 cgttagttaagtcatgctacatgttgtcttaaacaaggcagagcacctcatttcctcat 49599711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 43692424 - 43692479
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttct 454  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||    
T  43692424 gcgttagttaacttgcgctacgtgatgtcttaaacaaggcagaacacctcaattct 43692479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 40414019 - 40414078
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||||| | ||| ||| ||| |||||||||||||||||||||||||| ||||    
T  40414019 gcgttagttaacttgcactatgtgctgtcttaaacaaggcagaacacctcatttcctcat 40414078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 9512566 - 9512440
Alignment:
Q  286 tgaattctgct-ttcctcctgcactttttactcgcgctcagcagccttgcccagaataccattgcgctaattatgtaatgcaagtgttaaactctacgct 384  Q
    ||||||||||| |||  |||||||||||| ||||||||| ||| ||||||  | ||||||  |||| || ||| |||| ||||||||||||||||  | |    
T  9512566 tgaattctgctcttcaccctgcactttttgctcgcgctctgcaaccttgctgaaaatacccatgcgttagttaagtaacgcaagtgttaaactctgtgtt 9512467  T
Q  385 acttaattaacgttgcgttagttaact 411  Q
    | |||| ||||| ||||| ||||||||    
T  9512466 atttaactaacgctgcgtgagttaact 9512440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 39206 - 39262
Alignment:
Q  402 ttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||    
T  39206 ttagttacctcacgctacgtgttgtcttaaaaaaggcagaacacctcatttcctcat 39262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 7081560 - 7081619
Alignment:
Q  399 gcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    |||||||||||||| |||||||||  || |||||||||||| ||||||||||||| ||||    
T  7081560 gcgttagttaacttgcgctacgtgcggtcttaaacaaggcataacacctcatttcctcat 7081619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 408
Target Start/End: Original strand, 10397863 - 10397962
Alignment:
Q  309 tttttactcgcgctcagcagccttgcccagaataccattgcgctaattatgtaatgcaagtgttaaactctacgctacttaattaacgttgcgttagtta 408  Q
    ||||| ||||||| ||||||||||||||| ||| |   |||| || ||| ||||  |||||||||||||||  ||||||||| ||||| |||||||||||    
T  10397863 tttttgctcgcgcccagcagccttgcccaaaatgctcatgcgttagttaagtaacacaagtgttaaactctgtgctacttaactaacgctgcgttagtta 10397962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 41758119 - 41758169
Alignment:
Q  400 cgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcat 450  Q
    |||||||||| | |||||||||||||| ||||||||||| |||||||||||    
T  41758119 cgttagttaagtcacgctacgtgttgtcttaaacaaggcggaacacctcat 41758169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 458
Target Start/End: Original strand, 33369877 - 33369970
Alignment:
Q  364 gcaagtgttaaactctacgctacttaattaacgttgcgttagttaacttacgctacgtgttgttttaaacaaggcagaacacctcatttcttcat 458  Q
    ||||||||||||||||  |  | |||| |||||  | ||||||||| | |||||||||| ||||| ||||||||||||| |||||||||| ||||    
T  33369877 gcaagtgttaaactctgtgtgagttaactaacgccgagttagttaattcacgctacgtgctgttt-aaacaaggcagaatacctcatttcctcat 33369970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 4286456 - 4286529
Alignment:
Q  359 gtaatgcaagtgttaaactctacgctacttaattaacgttgcgttagttaacttacgctacgtgttgttttaaa 432  Q
    |||| |||||||||||| ||| |||||||||| ||| | ||||| |||||||| || |||| ||| ||||||||    
T  4286456 gtaaagcaagtgttaaattctgcgctacttaactaatgctgcgtgagttaactcacactacatgtagttttaaa 4286529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University