View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_5 (Length: 499)
Name: NF1403_low_5
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 7211734 - 7212144
Alignment:
| Q |
1 |
tgccgctataactgttatctgataacattttgctagcgtagggcggaactatatcaatttgtttaaggttcagtgacactatttaacaacactggtctaa |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7211734 |
tgccgctataaatgttatctgataacattttgctagcgtatggcggaactatagcaatttgtttaaggttcagtgacactatttaacaacactggtctaa |
7211833 |
T |
|
| Q |
101 |
accaattggacttcatgctgctttagtcttccctgttgttacctgatgtggacttattgcatatgcttatgtaggtaatgagttaagtggtgaaggcatt |
200 |
Q |
| |
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||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7211834 |
accgattggacttcatcctgctttagtcttccctgttgttacctgatgttgacttattgcatatgcttatgtaggtaatgagttaagtggtgaaggcatt |
7211933 |
T |
|
| Q |
201 |
ggtgcatcagtcggtgttgcaccgtatgggaaagacgtgataaaacttaaacgaattctagatgtgttatacaagaactcaaggttcaaaccctcgcttg |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7211934 |
ggtgcatcagtcggtgttgcacggtatgggaaagacgtgataaaacttaaacgaattctagatgtgttatacaagaacttaaggttcaaaccctcgcttg |
7212033 |
T |
|
| Q |
301 |
tagcacctggtggattttatgtaaaggaatggtacactaagcttcttcagatttctggttcaggcgtagtcaatgttctaactcatcatatatataactt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7212034 |
tagcacctggtggattttatgtaaaggaatggtacactaagcttcttcatatttctggttcaggcgtagtcaatgttgtaactcatcatatatataactt |
7212133 |
T |
|
| Q |
401 |
gggcacaggtt |
411 |
Q |
| |
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|||| |||||| |
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|
| T |
7212134 |
gggcccaggtt |
7212144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 87 - 398
Target Start/End: Original strand, 7205218 - 7205529
Alignment:
| Q |
87 |
caacactggtctaaaccaattggacttcatgctgctttagtcttccctgttgttacctgatgtggacttattgcatatgcttatgtaggtaatgagttaa |
186 |
Q |
| |
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|||||||||||||| ||| ||| |||||| | ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| | |
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| T |
7205218 |
caacactggtctaagccatttgatcttcatcccactttagtcttctttgttgttatcagatgtggacttattgcatatgcttatgtaggtaatgagttga |
7205317 |
T |
|
| Q |
187 |
gtggtgaaggcattggtgcatcagtcggtgttgcaccgtatgggaaagacgtgataaaacttaaacgaattctagatgtgttatacaagaactcaaggtt |
286 |
Q |
| |
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||||| |||| ||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
7205318 |
gtggtacaggcgttggtgcatcagttgtcgttgcacagtatgggaaagacgtgataaaccttaaacgaattctagatgagttatacaagaactcgaggtt |
7205417 |
T |
|
| Q |
287 |
caaaccctcgcttgtagcacctggtggattttatgtaaaggaatggtacactaagcttcttcagatttctggttcaggcgtagtcaatgttctaactcat |
386 |
Q |
| |
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|||||||| ||||||||||||| |||| ||||| ||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||| |||||| |
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| T |
7205418 |
caaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataagcttcttcagctttctggtccaggcgtaatcaatgttctgactcat |
7205517 |
T |
|
| Q |
387 |
catatatataac |
398 |
Q |
| |
|
||| |||||||| |
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|
| T |
7205518 |
catttatataac |
7205529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 121 - 398
Target Start/End: Original strand, 7198331 - 7198608
Alignment:
| Q |
121 |
ctttagtcttccctgttgttacctgatgtggacttattgcatatgcttatgtaggtaatgagttaagtggtgaaggcattggtgcatcagtcggtgttgc |
220 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||||| | ||||| |
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|
| T |
7198331 |
ctttagtcttctctgttgttatccgatgtggacttattgcatatgcttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgc |
7198430 |
T |
|
| Q |
221 |
accgtatgggaaagacgtgataaaacttaaacgaattctagatgtgttatacaagaactcaaggttcaaaccctcgcttgtagcacctggtggattttat |
320 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||| |||| |
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| T |
7198431 |
acagtatgggaaagacgtgataaaccttaaacgaattctagatgagttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttat |
7198530 |
T |
|
| Q |
321 |
gtaaaggaatggtacactaagcttcttcagatttctggttcaggcgtagtcaatgttctaactcatcatatatataac |
398 |
Q |
| |
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| ||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||| ||||||||| |||||||| |
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|
| T |
7198531 |
gataaggaatggtacaataagcttcttcagctttctggtccaggcgtaatcaatgttctgactcatcatttatataac |
7198608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
| Q |
436 |
caagaagaaaggcattgatgatagtatataacaac |
470 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
913263 |
caagaagaaaggcattgatgatagtatataacaac |
913229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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