View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_9 (Length: 418)
Name: NF1403_low_9
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 49894384 - 49894518
Alignment:
| Q |
14 |
agacattcaaacaaatttaaaaaagagatttaagattcaaatcaaactctaatcaatgacctattttattatgagaaaaaattgggtcgcctaccccaaa |
113 |
Q |
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| T |
49894384 |
agacattcaaacaaatttaaaa--gagatttaggattcaaatcaaactttaatcaatgacctattttattatgaaacaaaattgggtcgcctaccccaaa |
49894481 |
T |
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| Q |
114 |
gtaacacgaccctccgtggtaatattgggtggtgtag |
150 |
Q |
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| T |
49894482 |
gtaacaccaccctccgtggtaatattgggtggtgtag |
49894518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 49894636 - 49894734
Alignment:
| Q |
291 |
ttatagccatgctttttctgggaccaaataagtactgcatatcaaacagccttgcttttttctcctgagctgaaaggaaaggaacgtctttaatcttgc |
389 |
Q |
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| T |
49894636 |
ttatagccatgctttttctgggaccaaataagtactgcacatcaaacagccttgcttttttcttctgagctgaaaggaaaggaacgtttttaatcttgc |
49894734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 49894588 - 49894639
Alignment:
| Q |
220 |
atatcctaacacagtgttaggcaatacttttctccaaggttaggtacattat |
271 |
Q |
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| T |
49894588 |
atatcctaacacagtgttaggcaatacttttctccaaggttaggtacattat |
49894639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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