View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_high_13 (Length: 468)
Name: NF14040_high_13
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_high_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 468
Target Start/End: Original strand, 26575553 - 26576004
Alignment:
| Q |
21 |
ttcatttgtttataaataagagggtagttgctcttaaagtaacaactcattagaaaactatttattttggtaacttacaatgtttcatttgtttatacaa |
120 |
Q |
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| T |
26575553 |
ttcatttgtttataaataagagggtagttgctcttaaagtaacaactcattagaaaactatttattttggtaacttacaatgtttaatttgtttatacaa |
26575652 |
T |
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| Q |
121 |
ttagatgaaactttgtgttatgcgatgaataatgtctcttggtttgttaagtgttgaactgatgagttattcattgtcttcaacttttgtgtgtgaaact |
220 |
Q |
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| T |
26575653 |
taagatgaaactttgcgttatgcgatgaataatgtctcttggtttgttaagtgttgaactgatgagttattcattgtcttcaacttttgtgtgtgaaact |
26575752 |
T |
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| Q |
221 |
tgatatgatcatctggatttcatgagtactatgaacattatgtgaataatgatgtgatta---tattaattcatttcgacgtacgtatttaccacttagt |
317 |
Q |
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| T |
26575753 |
tgatatgatcatctgggtttcatgagtgctatgaacattatgtgaataattatgtgactatattattaattcatttcgacgtacgtatttaccacttagt |
26575852 |
T |
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| Q |
318 |
ccaactttaagaatctcaggttatgtatttactgtgataccgcgtcccaagacaagtcactgcaaaagctacaactgtaagctttcatttcgacgtgcg- |
416 |
Q |
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| T |
26575853 |
ccaactttaagaatctcaggttatgtatttactgtgataccgcgtcccaagacaagtcactgcaaaagctacaactgtaagctttcatttcgacgtgcgt |
26575952 |
T |
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| Q |
417 |
nnnnnnnnnnngcacaagccatttcgacgtgcgttcatatgtgttcgcccct |
468 |
Q |
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| T |
26575953 |
tttttttttttgtacaagccatttcgacgtgcgttcatatgtgttcgcccct |
26576004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 26575504 - 26575566
Alignment:
| Q |
54 |
ttaaagtaacaactcattagaaaactatttattttggtaacttacaatgtttcatttgtttata |
117 |
Q |
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| T |
26575504 |
ttaaagaaacaactcatta-aaaactgtttattttggtattttacaatgtttcatttgtttata |
26575566 |
T |
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