View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14040_high_22 (Length: 390)
Name: NF14040_high_22
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 16023448 - 16023811
Alignment:
| Q |
9 |
acatcatcattcaccaaaaagtgatgatcaaaactttgactttgatgattcttctcttgagactcatgatctgcatattgatccatgttgatgaagctat |
108 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16023448 |
acatcatcattcaccaaaaagttatgatcaaaactttgactttgatgattcttctcttgagactcatgatctgaatattgatccatgttgatgaagctat |
16023547 |
T |
|
| Q |
109 |
caacaaaatcatcgacttccgaagaaggtaataaacaaggagtggttgtagtatcaaaagtacacaattcaacatcatcaagtactgtctcttggtcatg |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16023548 |
caacaaagtcatcgacttccgaagaaggtaataaacaagaagtggtggtagtatcaaaagtacacaattcaacatcatcaagtattgtctcttggtcatg |
16023647 |
T |
|
| Q |
209 |
gcaatctccttcttgatcttgctccattcttgcagggcaaaaccttctgatagggaaatcaaggttgacactttcattcatatagaaggaaagccacatg |
308 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16023648 |
gcactctccttcttgatcttgctccattcttgcagggcaaaaccttcttatagggaaatcaaggttaacactttcattcatatagaaggaaagccacatg |
16023747 |
T |
|
| Q |
309 |
tttaagtcttccatatagaagaaaaagaattgagaggatttgagtgattttatgatcttataca |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16023748 |
tttaagtcttccatatagaagaaaaagaattgagaggatttgagtgattttatgatcttataca |
16023811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University