View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14040_high_25 (Length: 364)
Name: NF14040_high_25
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 35951511 - 35951847
Alignment:
| Q |
11 |
catcatcatggcataacatgaacagtaattatacagacatagctgaaatttatacacaacgacaataattgagaaaagtacttatggaatggggtactaa |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35951511 |
catcatcatggcataacatgaacaataattatacagacatagctgaaatttatacacaacgacaataattgagaaaagtacttatggaatggggtactaa |
35951610 |
T |
|
| Q |
111 |
tagattgatgatataatgtaaaatagtcatatcccttacatagagagaatagtacttatggaatggtgcaacatatatagcattaggatgcattaattaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35951611 |
tagattgatgatataatgtaaaatagttatatcccttacatagagagaatagtacttatggaatggtgtaacatatatagcattaggatgcattaattaa |
35951710 |
T |
|
| Q |
211 |
tttgacaaaaggactggagttaaacttgagagttcatcaagtgaaccttagaaataggttcatttgagattgcaactgcataagcccatgccttgagatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35951711 |
tttgacaaaaggactggagttaaacttgagagttcatcaagtgaaccttagaaataggttcatttgagattgcaactgcataagcccatgccttgagatg |
35951810 |
T |
|
| Q |
311 |
tttcttcattgccacatcatcatccaatggaggcatt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35951811 |
tttcttcattgccacatcatcatccaatggaggcatt |
35951847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University