View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14040_high_32 (Length: 292)

Name: NF14040_high_32
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14040_high_32
NF14040_high_32
[»] chr7 (15 HSPs)
chr7 (1-279)||(38321845-38322123)
chr7 (49-274)||(38156926-38157149)
chr7 (41-273)||(38149146-38149376)
chr7 (166-277)||(43028249-43028360)
chr7 (46-124)||(38172402-38172480)
chr7 (46-96)||(42797587-42797637)
chr7 (46-124)||(43028400-43028478)
chr7 (60-124)||(45999761-45999825)
chr7 (232-277)||(38172583-38172628)
chr7 (241-277)||(35072739-35072775)
chr7 (241-277)||(35099076-35099112)
chr7 (241-277)||(42797405-42797441)
chr7 (164-211)||(38187148-38187195)
chr7 (65-124)||(38285464-38285522)
chr7 (67-124)||(37884240-37884297)
[»] chr6 (2 HSPs)
chr6 (70-272)||(4163428-4163628)
chr6 (70-272)||(4225049-4225249)
[»] chr3 (1 HSPs)
chr3 (62-124)||(2222867-2222928)
[»] chr5 (1 HSPs)
chr5 (241-277)||(9664285-9664321)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 38322123 - 38321845
Alignment:
Q  1 atactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  38322123 atactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaactggcaaacatgggttttgactgactcacctgtgaagggctca 38322024  T
Q  101 tgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttagctgtattccaaaaaaccttcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322023 tgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttagctgtattccaaaaaaccttcaat 38321924  T
Q  201 aaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaatgcatcaattg 279  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  38321923 aaccttggagcggtaacatcaaagtccatcgtagtgtcaccattatattcaaaggatgagagattcaatgcatcaattg 38321845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 274
Target Start/End: Original strand, 38156926 - 38157149
Alignment:
Q  49 aaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat-tacttattgtgcaattgcaccaa 147  Q
    |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||| | ||||| ||||||||| |||| || | ||  |||||||| |||||    
T  38156926 aaacatcaacaagcaaacttggtttttgagtgactcacctgtgaagtgctcataatcatagataaattctcaatatgtagtaatcttgcaattggaccaa 38157025  T
Q  148 agggactgtgtagacatttctttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactata 247  Q
    |||||   ||  ||  ||| | ||| ||||||| ||||||||||| |||||||||| |||||||  |||||| |||  | | ||| || | |||||| ||    
T  38157026 aggga---tgctgatttttttctcttttagctgcattccaaaaaagcttcaataacattggagccttaacattaaacccaaccgtcgtatgaccactgta 38157122  T
Q  248 ttcaaatgatgagagattcaatgcatc 274  Q
    |||||||||||||||||||||||||||    
T  38157123 ttcaaatgatgagagattcaatgcatc 38157149  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 273
Target Start/End: Original strand, 38149146 - 38149376
Alignment:
Q  41 gaaagaataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat-tacttattgtgcaat 139  Q
    |||| |||||||||||||||| |||| ||| ||||||  ||||||||||||||| ||| |||| ||||| |||||||| ||||| |  | ||   |||||    
T  38149146 gaaacaataaacatcaaccagaaaacgtggtttttgagcgactcacctgtgaagtgcttatgatcatagataaattctggatatgttgtaatctggcaat 38149245  T
Q  140 tgcaccaaagggactgtgtagacatttctttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtca 239  Q
    || |||||| |||   ||| ||  ||||| ||| ||||| |  ||||| |||||||| |||||  |||||||  |||||||||| ||| ||   |||| |    
T  38149246 tggaccaaaagga---tgtggatttttctctcttttagccgcgttccagaaaacctttaataatattggagcattaacatcaaattccgtcagggtgtga 38149342  T
Q  240 ccactatattcaaatgatgagagattcaatgcat 273  Q
    |||||||||||||| |||| ||||||||||||||    
T  38149343 ccactatattcaaaggatgtgagattcaatgcat 38149376  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 43028360 - 43028249
Alignment:
Q  166 tctttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagatt 265  Q
    ||||||||  |||||||||||| |||||||||||||| ||||| || |||| |  ||    | |||| |||| | ||||||||||||| |||||||||||    
T  43028360 tctttctcagagctgtattccagaaaaccttcaataatcttggggccgtaaaagaaattatcctcgtggtgtaagcactatattcaaaggatgagagatt 43028261  T
Q  266 caatgcatcaat 277  Q
    ||||||||||||    
T  43028260 caatgcatcaat 43028249  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 38172402 - 38172480
Alignment:
Q  46 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 124  Q
    |||||||||||| || |||||||| ||||| ||| |||||||||||||| |||||||| ||||| ||| ||||| ||||    
T  38172402 aataaacatcaagcaacaaacatgagttttaacttactcacctgtgaagtgctcatgatcatagttaagttctcaatat 38172480  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 42797637 - 42797587
Alignment:
Q  46 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaaggg 96  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||    
T  42797637 aataaacatcaactagcaaacatgggttttgagtgactcaccagtgaaggg 42797587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 43028478 - 43028400
Alignment:
Q  46 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 124  Q
    |||||||| |||| |||||||| ||||||||| |||||||||||||||| ||| |||  || |||||||||||| ||||    
T  43028478 aataaacaccaactagcaaacacgggttttgagtgactcacctgtgaagtgctgatgttcacagctaaattctcaatat 43028400  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 45999761 - 45999825
Alignment:
Q  60 agcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 124  Q
    ||||||||||| ||| |||  |||||||||||||||||| |||| ||||||||||||||| ||||    
T  45999761 agcaaacatggatttagacaaactcacctgtgaagggctgatgatcatagctaaattctcaatat 45999825  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 38172583 - 38172628
Alignment:
Q  232 tagtgtcaccactatattcaaatgatgagagattcaatgcatcaat 277  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||||    
T  38172583 tagtgtaaccactatattcaaaggatgagagatttaatgcatcaat 38172628  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 35072739 - 35072775
Alignment:
Q  241 cactatattcaaatgatgagagattcaatgcatcaat 277  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35072739 cactatattcaaaggatgagagattcaatgcatcaat 35072775  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 35099076 - 35099112
Alignment:
Q  241 cactatattcaaatgatgagagattcaatgcatcaat 277  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35099076 cactatattcaaaggatgagagattcaatgcatcaat 35099112  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 42797441 - 42797405
Alignment:
Q  241 cactatattcaaatgatgagagattcaatgcatcaat 277  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42797441 cactatattcaaaggatgagagattcaatgcatcaat 42797405  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 38187148 - 38187195
Alignment:
Q  164 tttctttctcttagctgtattccaaaaaaccttcaataaccttggagc 211  Q
    ||||| ||| ||||||| ||||||||||||||||||||| ||||||||    
T  38187148 tttctctctattagctgcattccaaaaaaccttcaataaacttggagc 38187195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 38285464 - 38285522
Alignment:
Q  65 acatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 124  Q
    ||||||||||||||| ||||||||||||| || |||||  ||||||||||||||| ||||    
T  38285464 acatgggttttgact-actcacctgtgaatgggtcatggtcatagctaaattctcaatat 38285522  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 37884297 - 37884240
Alignment:
Q  67 atgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 124  Q
    |||| |||||||  |||||||| |||||||||||||||||| |||||| |||| ||||    
T  37884297 atggattttgaccaactcacctatgaagggctcatgaccattgctaaagtctcaatat 37884240  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 272
Target Start/End: Original strand, 4163428 - 4163628
Alignment:
Q  70 ggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatattac-ttattgtgcaattgcaccaaagggactgtgtagacatttct 168  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || |||    
T  4163428 ggttttgactgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctct 4163527  T
Q  169 ttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaa 268  Q
     |  ||||| || ||||||||||||||||||||||||||||||  |||||| ||  ||   | | ||||  |||||||||||||| ||||||||||||||    
T  4163528 cttccttagttgcattccaaaaaaccttcaataaccttggagctttaacatgaagttc---ccttgtgtagccactatattcaaaggatgagagattcaa 4163624  T
Q  269 tgca 272  Q
    ||||    
T  4163625 tgca 4163628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 272
Target Start/End: Original strand, 4225049 - 4225249
Alignment:
Q  70 ggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatattac-ttattgtgcaattgcaccaaagggactgtgtagacatttct 168  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || |||    
T  4225049 ggttttgactgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctct 4225148  T
Q  169 ttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaa 268  Q
     |  ||||| || ||||||||||||||||||||||||||||||  |||||| ||  ||   | | ||||  |||||||||||||| ||||||||||||||    
T  4225149 cttccttagttgcattccaaaaaaccttcaataaccttggagctttaacatgaagttc---ccttgtgtagccactatattcaaaggatgagagattcaa 4225245  T
Q  269 tgca 272  Q
    ||||    
T  4225246 tgca 4225249  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 2222867 - 2222928
Alignment:
Q  62 caaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 124  Q
    |||||||| ||||||||| ||||||||||||| |||| |||  ||||||||||||||| ||||    
T  2222867 caaacatgagttttgact-actcacctgtgaatggctaatggtcatagctaaattctcaatat 2222928  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 9664321 - 9664285
Alignment:
Q  241 cactatattcaaatgatgagagattcaatgcatcaat 277  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  9664321 cactatattcaaaggatgagagattgaatgcatcaat 9664285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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