View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_high_35 (Length: 272)
Name: NF14040_high_35
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_high_35 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 25264699 - 25264431
Alignment:
| Q |
1 |
tttatctcatgtagtgtcatgtaaccaattccaatcgcttcgtcctatactaacacacattatttagctctcggtataagtaggttaggatagtcgccct |
100 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25264699 |
tttatctcatgtagtgtcatgtaaccaa--ccaattgcttcgtcctatactaacacacattatttagctctcggtataagtaggttagg-tagtcgccct |
25264603 |
T |
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| Q |
101 |
cccgagagaagtcatatacaccatctctagatctcgaaaatactccaagtacaacaaatcaacatacttggcgctcttatttctcaaagagtggtgccca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25264602 |
cccgagagaagtcatatacaccatctctagatctcgaaaatactccaagtacaacaaatcaacatacttggcgctcttatttctcaaagagaggtgccca |
25264503 |
T |
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| Q |
201 |
ccaagaaaagtaggtacatcgtgatggtgtatagtccagtgcaaccattcgctcactttgtcatcattcgca |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
25264502 |
ccaagaaaagtaggtacatcgtgatggtgtatagtccagtgcaaccatgcgctcactttgtcgtcattcgca |
25264431 |
T |
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