View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_high_38 (Length: 248)
Name: NF14040_high_38
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_high_38 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 48816282 - 48816166
Alignment:
| Q |
132 |
gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag |
231 |
Q |
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| T |
48816282 |
gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag |
48816183 |
T |
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| Q |
232 |
ttcaaagcaagtggttc |
248 |
Q |
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| T |
48816182 |
ttcaaagcaagtggttc |
48816166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 48816399 - 48816320
Alignment:
| Q |
15 |
aatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta |
94 |
Q |
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| T |
48816399 |
aatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta |
48816320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 15825484 - 15825385
Alignment:
| Q |
149 |
tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc |
248 |
Q |
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| T |
15825484 |
tcgaagaatcaagaaccgaagtgaatttgattgttagaaccgtagtcactgttggaaactatgacaatgttttagattgggagttcaaaacaagtggttc |
15825385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 48807690 - 48807588
Alignment:
| Q |
146 |
aggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtgg |
245 |
Q |
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| T |
48807690 |
aggttgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgcaggaaaatatgacaatattttagaatgggagttcaaaacaagtgg |
48807591 |
T |
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| Q |
246 |
ttc |
248 |
Q |
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||| |
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| T |
48807590 |
ttc |
48807588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 48789943 - 48789846
Alignment:
| Q |
151 |
gaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc |
248 |
Q |
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| T |
48789943 |
gaagagtctagaactgaagtgaatttgattgttagaactgtagtcacggtaggaaactatgacaatgttttagattgggagttcaaaacaagtggttc |
48789846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 48807836 - 48807763
Alignment:
| Q |
15 |
aatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatt |
88 |
Q |
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| T |
48807836 |
aatatcatgtggcgtcacactgaaactgacattcctaatgaattcgtaagagtttttactgcaaccaactaatt |
48807763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 15825623 - 15825579
Alignment:
| Q |
21 |
atgtggcgtcacactgaaactggcattcctaatgaattcgtaaga |
65 |
Q |
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| T |
15825623 |
atgtggcgtcacactgaaactagcattcctaatgaatttgtaaga |
15825579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 48790092 - 48790048
Alignment:
| Q |
21 |
atgtggcgtcacactgaaactggcattcctaatgaattcgtaaga |
65 |
Q |
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| T |
48790092 |
atgtggcgtcacactgaaactggcattcctgatgaatttgtaaga |
48790048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 48834101 - 48834149
Alignment:
| Q |
17 |
tatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga |
65 |
Q |
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| T |
48834101 |
tatcatgtggcgtcacattgaaaccggcatttctgatgaattcgtaaga |
48834149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 48834277 - 48834376
Alignment:
| Q |
149 |
tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc |
248 |
Q |
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| T |
48834277 |
tcgaagaatcaagaaccgaagtaaacttgatagtgaggagtgtagttacagttggcaactatgacaacatcatagattgggagttcaaagcaagtggttc |
48834376 |
T |
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