View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14040_high_39 (Length: 245)

Name: NF14040_high_39
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14040_high_39
NF14040_high_39
[»] chr7 (4 HSPs)
chr7 (95-187)||(15579554-15579646)
chr7 (95-183)||(1273179-1273267)
chr7 (183-237)||(34422225-34422279)
chr7 (95-147)||(34422142-34422194)
[»] chr2 (3 HSPs)
chr2 (95-183)||(6943752-6943840)
chr2 (95-183)||(32455794-32455882)
chr2 (120-148)||(6755711-6755739)
[»] chr1 (2 HSPs)
chr1 (95-183)||(35389724-35389812)
chr1 (10-81)||(48651395-48651466)
[»] scaffold0007 (1 HSPs)
scaffold0007 (95-177)||(242929-243015)
[»] chr5 (1 HSPs)
chr5 (106-183)||(33374109-33374186)
[»] chr4 (3 HSPs)
chr4 (95-153)||(38261886-38261944)
chr4 (123-183)||(51600359-51600419)
chr4 (120-149)||(1808816-1808845)
[»] chr3 (1 HSPs)
chr3 (98-183)||(13882078-13882163)
[»] chr8 (1 HSPs)
chr8 (120-152)||(41011029-41011061)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 15579554 - 15579646
Alignment:
Q  95 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagctttaatgg 187  Q
    ||||| || |||| |||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  15579554 taactagaaggggctaggagagctttgtcacttggttgattttgtcaacattttagatactcaattacaacttaaggatgttagctttaatgg 15579646  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 1273179 - 1273267
Alignment:
Q  95 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 183  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||| ||||||||| ||||    
T  1273179 taactagacggggctaggagcgctttgtcacttggttgattttgtcaacattttggatactcaattacaacttacggatgttagtttta 1273267  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 34422225 - 34422279
Alignment:
Q  183 aatggttccaaacgagctcagcaggactgttgatcagttccccctcctctggcct 237  Q
    ||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||    
T  34422225 aatggttccaaacgagctcagcacgactattgatcaatcccccctcctttggcct 34422279  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 34422142 - 34422194
Alignment:
Q  95 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacattt 147  Q
    ||||||||| ||| ||||||| |||||| |||||||||||||||| |||||||    
T  34422142 taactggaccgggctaggagcactttgttacttggttgattttgttaacattt 34422194  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 6943752 - 6943840
Alignment:
Q  95 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 183  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||    
T  6943752 taactagatggggctaggagcgctttgtcacttggttgattttgtcaacatttcagatactcatttacaacttaaggatgttagtttta 6943840  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 32455882 - 32455794
Alignment:
Q  95 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 183  Q
    |||||||| |||| ||||| | ||||||| |||||||||||||||||||||||| |||  |||| | ||||||||| ||||||| ||||    
T  32455882 taactggatggggctaggaacactttgtcccttggttgattttgtcaacatttcggatactcaacttcaacttaagaatgttagtttta 32455794  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 6755711 - 6755739
Alignment:
Q  120 tgtcacttggttgattttgtcaacatttc 148  Q
    |||||||||||||||||||||||||||||    
T  6755711 tgtcacttggttgattttgtcaacatttc 6755739  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 35389812 - 35389724
Alignment:
Q  95 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 183  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||  ||| |||||||||||||||||||| ||||    
T  35389812 taactggacggggctaggagcactttgtcacttggttgattttgtccatatttcggatactcagttacaacttaaggatgttagtttta 35389724  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 48651466 - 48651395
Alignment:
Q  10 tgcaagttccttatttatcttatctaatgataagataaaatctcattctagaacttaataacaaaaatgata 81  Q
    ||||||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  48651466 tgcaagttccttaattatcttatccaatgataagatgaaatcccattcaagaacttaataacaaaaatgata 48651395  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 242929 - 243015
Alignment:
Q  95 taactggacggggttaggagcgctttgtcact----tggttgattttgtcaacatttcagatgttcaattacaacttaaggatgtta 177  Q
    |||||||| |||| |||||||||||||| |||    ||||||||||||||||||||||||||  ||||||||| |||||| ||||||    
T  242929 taactggatggggctaggagcgctttgttactagcttggttgattttgtcaacatttcagatactcaattacagcttaagaatgtta 243015  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 33374186 - 33374109
Alignment:
Q  106 ggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 183  Q
    |||||| |||| ||||||||||||||||||| ||||| ||||||||| ||||||||||  ||||| ||||||| ||||    
T  33374186 ggttagaagcgttttgtcacttggttgatttcgtcaatatttcagatattcaattacagtttaagaatgttagtttta 33374109  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 38261944 - 38261886
Alignment:
Q  95 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatg 153  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||    
T  38261944 taactagacggggctaggagcgctttgtcacatggttgatttagtcaacatttcggatg 38261886  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 51600419 - 51600359
Alignment:
Q  123 cacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 183  Q
    ||||| ||||||||||||||||||||| ||  ||||||| || ||||||||||||||||||    
T  51600419 cacttcgttgattttgtcaacatttcaaatactcaattaaaaattaaggatgttagcttta 51600359  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 1808845 - 1808816
Alignment:
Q  120 tgtcacttggttgattttgtcaacatttca 149  Q
    ||||||||||||||||||||||||||||||    
T  1808845 tgtcacttggttgattttgtcaacatttca 1808816  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 13882163 - 13882078
Alignment:
Q  98 ctggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 183  Q
    ||||| |||||||||| |||||||| ||||| |||||||||||||| |||| |||    ||||| | |||||||||||||| ||||    
T  13882163 ctggatggggttaggatcgctttgttacttgattgattttgtcaacttttcggatacataattatagcttaaggatgttagtttta 13882078  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 41011029 - 41011061
Alignment:
Q  120 tgtcacttggttgattttgtcaacatttcagat 152  Q
    |||||||||||||||||||||||||||||||||    
T  41011029 tgtcacttggttgattttgtcaacatttcagat 41011061  T

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