View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14040_low_1 (Length: 801)
Name: NF14040_low_1
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 4 - 785
Target Start/End: Complemental strand, 45123612 - 45122831
Alignment:
| Q |
4 |
tttacactgttaaatattgtactcttctctctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaata |
103 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45123612 |
tttacactgtcaaatattgtactattctctctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaata |
45123513 |
T |
|
| Q |
104 |
gacattcatagaaggatacatttgagaaacatttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcac |
203 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45123512 |
gacattcatagaaggatatatttgagaaacatttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcac |
45123413 |
T |
|
| Q |
204 |
aacataggtggaaacttcaaaaagcggagacgaaactatgatcattgtccaataacaactagaaaataatactatatgcaaacttttacaacacatagac |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45123412 |
aacataggtagaaacttcaaaaagcggagacgaaactatgatcattgtccaatgacaactagaaaataatactatatgcaaacttttacaacacatagac |
45123313 |
T |
|
| Q |
304 |
tagtcaaacactccattgatcccggtacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataa |
403 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45123312 |
tagtcaaacactccattgaccccgatacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataa |
45123213 |
T |
|
| Q |
404 |
aattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatataagtatcactttgtttgttttgcacttcaaga |
503 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
45123212 |
aattcagatatatacttaaaatatttctgattgatgtatcttgaaatacagaaatcgagcttatatataggtatcactttgtttgtcttgcacttcaaga |
45123113 |
T |
|
| Q |
504 |
aacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttgttcttcttgcaaagatcacgaaacaaccttgcttatc |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
45123112 |
aacaatattgtcacctacaagacttgtcaagcaataaagtaaacaagtggaggaatcatcttgttcttcttacaaagatcacgaaacaaccttgtttatc |
45123013 |
T |
|
| Q |
604 |
ttgttctacctcttcttttataatttaagtagttaatgtaggacttctccaacatgtattttttcagccaacaacaacagattgaaattttcatattcct |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
45123012 |
ttgttctacctcttcttttataatttaagtagttaatgtaggacttctccaacatgtattttttcagtcaacaacaacaaattgaaattttcatattcct |
45122913 |
T |
|
| Q |
704 |
agagataaaattttgagcttactaccaaatcggagatcattttcgttgccaaaacattatactagtaacaaacactaacaag |
785 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45122912 |
agagataaaattttgagcttactaccaaatcggagatcattttcgttgccaaaacattatactagtaccaaacactaacaag |
45122831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 34980595 - 34980546
Alignment:
| Q |
517 |
cctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttg |
566 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
34980595 |
cctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttg |
34980546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 22190644 - 22190691
Alignment:
| Q |
247 |
attgtccaataacaactagaaaataatactatatgcaaacttttacaa |
294 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
22190644 |
attgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 35397399 - 35397486
Alignment:
| Q |
385 |
agtataatagaaaagataaaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatata |
472 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||| ||||||||| ||||||||||||||||||| |||| ||||| ||| ||||||||| |
|
|
| T |
35397399 |
agtataagagaaaaggaaaatgtcacatataaacttaaaatgtttctgactgatgcatcttataataaagaaagagagtttatatata |
35397486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University