View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14040_low_11 (Length: 509)
Name: NF14040_low_11
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_11 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Complemental strand, 7415404 - 7414918
Alignment:
| Q |
17 |
agaatccatatgaatttatgcctgagaggtttcttggtaaagatatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415404 |
agaatccatatgaatttatgcctgagaggtttcttggtaaagatatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggat |
7415305 |
T |
|
| Q |
117 |
gtgtcctggttaccctcttggtattaaggtgattcaaacaagtttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaaggag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415304 |
gtgtcctggttaccctcttggtattaaggtgattcaaacaagtttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaaggag |
7415205 |
T |
|
| Q |
217 |
gatttgaatatggaggagatttttgggctttctacacctaagaaaataccattagaaattgttgtggagcctagacttgctgatcatctttactcccttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415204 |
gatttgaatatggaggagatttttgggctttctacacctaagaaaataccattagaaattgttgtggagcctagacttgctgatcatctttactcccttt |
7415105 |
T |
|
| Q |
317 |
gagtattttctctacttaggttttgtgtttaataaggttgagaattcaacataattggatttgtgtgagtttaatgtcatcatacttaattacaagagcg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415104 |
gagtattttctctacttaggttttgtgtttaataaggttgagaattcaacataattggatttgtgtgagtttaatgtcatcatacttaattacaagagca |
7415005 |
T |
|
| Q |
417 |
nnnnnnntgtagacatgataatgaagaagtatatgatgttggattgttggaatttacatttagtaatgagtgtagtagtatatccct |
503 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415004 |
aaaaaaatgtaggcatgataatgaagaaatatatgatgttggattgttggaatttacatttagtaatgagtgtagtagtatatccct |
7414918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 7423061 - 7422766
Alignment:
| Q |
19 |
aatccatatgaatttatgcctgagaggtttcttggtaaagatatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgt |
118 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
7423061 |
aatccatatgagtttatacctgagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgt |
7422962 |
T |
|
| Q |
119 |
gtcctggttaccctcttggtattaaggtgattcaaacaagtttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaaggagga |
218 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| || |||| || ||||| |
|
|
| T |
7422961 |
gtcctggttatcctcttggtcttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaatgatatgaagaaagagga |
7422862 |
T |
|
| Q |
219 |
tttgaatatggaggagatttttgggctttctacacctaagaaaataccattagaaattgttgtggagcctagacttgctgatcatctttactccct |
314 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |||||||||| ||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
7422861 |
tttgaatatggaggagatttttgggctgactactcctaggaaaataccactagaagttgttgtggagcctagacttcctcatcatctttactccct |
7422766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 7429470 - 7429161
Alignment:
| Q |
19 |
aatccatatgaatttatgcctgagaggtttcttggtaaagatatagat---gtaaaaggacatgattttgagttgttaccatttggtgctggtagaagga |
115 |
Q |
| |
|
||||||||||||||||| || ||||||||| || || ||||||||| ||||||||||||||| | || |||| ||||| |||||||||||||||| |
|
|
| T |
7429470 |
aatccatatgaatttataccagagaggtttattaacaatgatatagatataataaaaggacatgattataagatgttgccattaggtgctggtagaagga |
7429371 |
T |
|
| Q |
116 |
tgtgtcctggttaccctcttggtattaaggtgattcaaacaagtttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaagga |
215 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||||| || ||||||| || |
|
|
| T |
7429370 |
tgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggctaacttgttgcatggatttaattggagattacctaatgatatgaaaaaaga |
7429271 |
T |
|
| Q |
216 |
ggatttgaatatggaggagatttttgggctttctacacctaagaaaataccattagaaattgttgtggagcctagacttgctgatcatctttactccctt |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||| | |||||||||| | ||| |
|
|
| T |
7429270 |
ggatttaaatatggaggagatttttgggctcactacacctaagaaaataccattagaagttgttttggagcctaaacttccgtatcatctttattgcctc |
7429171 |
T |
|
| Q |
316 |
tgagtatttt |
325 |
Q |
| |
|
| |||||||| |
|
|
| T |
7429170 |
taagtatttt |
7429161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 91240 - 91196
Alignment:
| Q |
70 |
aaaggacatgattttgagttgttaccatttggtgctggtagaagg |
114 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
91240 |
aaaggacatgattttcagttgataccttttggtgctggtagaagg |
91196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 22904215 - 22904261
Alignment:
| Q |
79 |
gattttgagttgttaccatttggtgctggtagaaggatgtgtcctgg |
125 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
22904215 |
gattttcagtttataccatttggtgctgggagaaggatgtgtcctgg |
22904261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 22906329 - 22906283
Alignment:
| Q |
79 |
gattttgagttgttaccatttggtgctggtagaaggatgtgtcctgg |
125 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||||| |
|
|
| T |
22906329 |
gattttgagtttataccatttggtgctgggagaaggatatgtcctgg |
22906283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University