View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_12 (Length: 475)
Name: NF14040_low_12
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 4091858 - 4092312
Alignment:
| Q |
1 |
aaaatatcctaaataaaatattaaccctagtctcaaacttgcatgtaataacaaatgctagcatccaaatacacaagtagtannnnnnnnccccaagcat |
100 |
Q |
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| T |
4091858 |
aaaatatcctaaataaaatattaaccctagtctcaaacttgcatgtaataacaaatgctagcatccaaatacacaagtagtattttttt-ccccaagcat |
4091956 |
T |
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| Q |
101 |
tatccactaggctagggttcgtagccatcatgactaggctgaagttcatcctcatcaaaaagggtttgaagattttgcatatcatgacatgtattcaact |
200 |
Q |
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| T |
4091957 |
tatccactaggctagggttcgtagccatcatgactaggctgaagttcatcctcatcaaaaagggtttgaagattttgcatatcatgacatgtattcaact |
4092056 |
T |
|
| Q |
201 |
tgatcttgattccaacaataacagcttcnnnnnnnatccttctcaaccagagaactaaaagaaaaagaggaagaaagataaataaagtgataaattgtat |
300 |
Q |
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| T |
4092057 |
tgatcttgattccaacaataacagcttctttttttatccttctcaaccagagaactaaaagaaaaagaggaagaaagataaataaagtgataaattgtat |
4092156 |
T |
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| Q |
301 |
atatgtatgcaagtagaatatagaaacctgtagatagggccatattgcttagcaaggactgagaaaacgtcaggaccatactttgctagcaatggaaggt |
400 |
Q |
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| T |
4092157 |
----gtatgcaagtagaatatagaaacctgtagatagggccatattgcttagcaaggactgagaaaacgtcaggaccatactttgctagcaatggaaggt |
4092252 |
T |
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| Q |
401 |
gtcctacaagaggcagagatggtgggcctggaactttccataacttccaaaatggccaat |
460 |
Q |
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| T |
4092253 |
gtcctacaagaggcagagatggtgggcctggaactttccttaacttccaaaatggccaat |
4092312 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 439
Target Start/End: Complemental strand, 48175660 - 48175545
Alignment:
| Q |
324 |
aaacctgtagatagggccatattgcttagcaaggactgagaaaacgtcaggaccatactttgctagcaatggaaggtgtcctacaagaggcagagatggt |
423 |
Q |
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||||||||| || || ||||||||||| ||||||||||||||||| ||||| |||| || || ||||| ||||||| ||||| | |||||||||||| |
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| T |
48175660 |
aaacctgtaaattggaccatattgcttggcaaggactgagaaaacatcagggccatgtttagccagcaagtgaaggtgccctaccaacggcagagatggt |
48175561 |
T |
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| Q |
424 |
gggcctggaactttcc |
439 |
Q |
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|| || ||||| |||| |
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| T |
48175560 |
ggaccaggaaccttcc |
48175545 |
T |
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