View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_17 (Length: 432)
Name: NF14040_low_17
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 32770555 - 32770149
Alignment:
| Q |
19 |
aacttatctctttatgtcacaaaaacaataatcaaacacattaaggtacaatgcaactatgcaagacatgtatatatacctccagttggtcgccaatgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32770555 |
aacttatctctttatgtcacaaaaacaataatcaaaca--ttaaggtacaatgcaactatgcaagacatgtatatatacctccagttggtcgccaatgtg |
32770458 |
T |
|
| Q |
119 |
aattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32770457 |
aattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccttgaacatcatttgggacaagaagcgtgataaaa |
32770358 |
T |
|
| Q |
219 |
cacatgtctgaatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32770357 |
cacatgtctgaatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctg |
32770258 |
T |
|
| Q |
319 |
catactcctttagctcatgaccttcaagccctaaccctattgacaagtttttacacaacttgtctacaaccccatgtaggtgtttgccgtattcctcgtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32770257 |
catactcctttagctcatgaccttcaagccctaaccctattgacaagtttttgaacaacttgtctacaaccccatgtaggtgtttgccgtattcctcgtt |
32770158 |
T |
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| Q |
419 |
catctctct |
427 |
Q |
| |
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|||||||| |
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| T |
32770157 |
gatctctct |
32770149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 24400586 - 24400375
Alignment:
| Q |
89 |
tatatatacctccagttggtcgccaatgtgaattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctga |
188 |
Q |
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|||| ||||||||| |||||| ||||||||||| |||| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
24400586 |
tatacatacctccatttggtcaccaatgtgaatgacaagggcattagggacatacttaacatcataccattgaccatctctagaggcttgaaggccctgc |
24400487 |
T |
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| Q |
189 |
acatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatct |
288 |
Q |
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|| ||||| ||||| | || || | |||| |||| |||| || | || ||||| ||||||||||||||| || || ||||||||||||||||| | |
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| T |
24400486 |
acttcattagggaccaaaatggtaagaaaagacatatctgtgtgtggaggcacacctagaacaagatcaggaactggacatggtgggtaatagttgattt |
24400387 |
T |
|
| Q |
289 |
ttaacaagtgaa |
300 |
Q |
| |
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| |||| ||||| |
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| T |
24400386 |
tcaacatgtgaa |
24400375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 286
Target Start/End: Complemental strand, 24407355 - 24407203
Alignment:
| Q |
134 |
ggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatga |
233 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| || | ||||| || ||| ||||||| |||| || |
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| T |
24407355 |
ggggacatacttaacatcataccattgaccatctctagaggcttgaagaccctccacttcattgggtatgagaagggtaatataacacatatctgtgtgt |
24407256 |
T |
|
| Q |
234 |
gctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgat |
286 |
Q |
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| ||| ||||| || || ||||||||||| || || |||||||| || ||||| |
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| T |
24407255 |
ggtggcacacctagtaccagatcaggacatggacatggtgggtagtaattgat |
24407203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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