View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_2 (Length: 671)
Name: NF14040_low_2
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 20 - 671
Target Start/End: Original strand, 31611988 - 31612640
Alignment:
| Q |
20 |
gaaatacaattaacaaggatgtaagaaatgaataaaatagtatctctttcgtcctcttgagttacaaattagaatctaaaacactgaaatctagatatat |
119 |
Q |
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| T |
31611988 |
gaaatacaattaacaaggatgtaagaaatgaataaaatagtatctctttcgtcctcttgagttacaaattagaatctaaaacactgaaatctagatatat |
31612087 |
T |
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| Q |
120 |
gtggttcaaatgtgtgtaaataaaatttagttactgataaggcc-taaatatattgttcaaaatcttaaattggcacaaatacaatttcgatccctatac |
218 |
Q |
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| T |
31612088 |
gtagttcaaatgtgtgtaaataaaatttagttactgataaagccctaaatataatgttcaaaatcttaaattggcacaaatacaatttcgatccctatac |
31612187 |
T |
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| Q |
219 |
tttatctcatttacgagtttggttcttcatttttaaattcatgatttaggtcaataacttcaaaatgcatgaacttttttctacctatacaatttgatgc |
318 |
Q |
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| T |
31612188 |
tttatctcatttatgagtttggttcttcatttttaaattcatgatttaggtcaataacttcaaaatgcatgaacttttttctgcctatacaatttgatgt |
31612287 |
T |
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| Q |
319 |
tgaattttaatatcatccatgttttttatatgtagttatcttatctattaaccttgtgtaggggctggaatccttggtcatctctctgattcgtttcttg |
418 |
Q |
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| T |
31612288 |
tgaattttaatatcatccatgttttttatatgtagttatcttatctattaaccttgtgtaggggctggaatctttggtcatctctctgattcgtttcttg |
31612387 |
T |
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| Q |
419 |
gacgaaaaggatctctcacgatagtttgcatactaaacagcatcttcggcatcctaacagccttctcccccaattacatctcctacttcttcctccgctt |
518 |
Q |
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| T |
31612388 |
gacgaaaaggatctctcacgatagtttgcatcctaaacagcatcttcagcatcctaacagccttctcccccaattacatctcctacttcttcctccgctt |
31612487 |
T |
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| Q |
519 |
cctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagcccgtaggccccacaatgcgtggtgccgcaggcatgtctacc |
618 |
Q |
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| T |
31612488 |
cctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagcccgtaggccccacaatgcgtggtgccgcaggcatgtctacc |
31612587 |
T |
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| Q |
619 |
ttctacttcttctcaacaggcatcgcagtcctctcaggcatagcaaacatctt |
671 |
Q |
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| T |
31612588 |
ttctacttcttctcaacaggcatcgcagtcctctcaggcatagcaaacatctt |
31612640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 632
Target Start/End: Complemental strand, 34419175 - 34419052
Alignment:
| Q |
509 |
tcctccgcttcctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagcccgtaggccccacaatgcgtggtgccgcagg |
608 |
Q |
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|||||||| ||||||| ||||||||||| || || || ||||| ||||||||||| |||||||| |||||| | ||||| ||| ||||| ||||| |
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| T |
34419175 |
tcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcagg |
34419076 |
T |
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| Q |
609 |
catgtctaccttctacttcttctc |
632 |
Q |
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| T |
34419075 |
aatgtccaccttctacttcttctc |
34419052 |
T |
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