View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_20 (Length: 412)
Name: NF14040_low_20
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 2179928 - 2179550
Alignment:
| Q |
20 |
actgccattgagaatatgcaaaacaaaagaagtaacatcctgtcatattatgcatggaactgatgataaaataatgttggcatgccatctggtttcgatg |
119 |
Q |
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| T |
2179928 |
actgccattgagaatatgcaaaacaaaagaagtaacatcccgtcatattatgcatggaactgatgataaaataatgttggcatgccatctggtttcgatg |
2179829 |
T |
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| Q |
120 |
ctgcgacctgcgaggagcttcaattgtttagccgccatagccacttcaacaactgtgaacactttctctaatattcctttcatgggatttgtcagtctac |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2179828 |
ctgcgacctgcgaggagcttcaattgcttagccgccatagccacttcaacaactgtgaacactttctctaatattcctttcatgggatttgtcagtttac |
2179729 |
T |
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| Q |
220 |
cttgcacaataaaaatgtaagagagaattgtgttactgccatttagtactatttttctgaag-nnnnnnnngagtgatatttcgagtagatgcattgtct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
2179728 |
cttgcacaataaaaatgtaagagagaattgtgttactgccatttagtactatttttctgaagaaaaaaaaagagagatattttgagtagatgcattgtct |
2179629 |
T |
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| Q |
319 |
catcctcctcaaataagagtaatttaggtacttagtttttaatattcacttctaggactgaagagtatttttatgaatg |
397 |
Q |
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|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2179628 |
catcctcctcaaattagagtaatttagttacttaggttttaatattcacttctaggacttaagagtatttttatgaatg |
2179550 |
T |
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