View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_21 (Length: 399)
Name: NF14040_low_21
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 45500796 - 45500428
Alignment:
| Q |
18 |
aaatgcagttcttgactagtggtggaggctcaaaggcatggaaaggagacgttgataaaaataggagagatggggtcaagttttactacgacggccaagg |
117 |
Q |
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| T |
45500796 |
aaatgcagttcttgactagtggtggaggctcaaaggcatggaaaggagacgttgataaaaataggagagatggggtcaagttttactatgacggacaagg |
45500697 |
T |
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| Q |
118 |
atttatgtctgttgagcttaagcaaatgaatgccaaagttgtctattacgatatttttggcaatgttttgcatgttctgaatctgtccaaggcgttacat |
217 |
Q |
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| T |
45500696 |
atttatgtctgttgagcttaagcaaatgaatgccaaagttgtctattacgatatttttggcaatgttttgcatgttctgaatctgtccaaggcgttacat |
45500597 |
T |
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| Q |
218 |
tatgcgatataagtaaggttgtcaaatccgcatctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatg |
317 |
Q |
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| T |
45500596 |
tatgcgatataagtatggttgtcaaatccgcatctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatg |
45500497 |
T |
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| Q |
318 |
aatgtatttatgttttgaaaacttccggtccaaagaacgcttctgcgcttattgtctatatatgactct |
386 |
Q |
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| T |
45500496 |
aatgtatttatgttttgaaaacttccggtccaaagaacgcttctgcgcttattgtctatatatgactct |
45500428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 375
Target Start/End: Original strand, 27782353 - 27782479
Alignment:
| Q |
249 |
atctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatgaatgtatttatgttttgaaaacttccggtcc |
348 |
Q |
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| T |
27782353 |
atctaaataagctgggggaaattgtgaaatcaggccttattaagaatgatatcaacaagcctaattgtgaatgtatttatgtattgaaaacttctattcc |
27782452 |
T |
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| Q |
349 |
aaagaacgcttctgcgcttattgtcta |
375 |
Q |
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| T |
27782453 |
aaagaacgcttctgcgcttatagtcta |
27782479 |
T |
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