View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14040_low_23 (Length: 389)

Name: NF14040_low_23
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14040_low_23
NF14040_low_23
[»] chr2 (14 HSPs)
chr2 (1-291)||(30076218-30076508)
chr2 (79-288)||(5890499-5890708)
chr2 (1-282)||(17302996-17303267)
chr2 (1-84)||(5887927-5888010)
chr2 (231-291)||(9615682-9615743)
chr2 (235-291)||(12060077-12060133)
chr2 (231-290)||(4056207-4056266)
chr2 (232-291)||(6590413-6590472)
chr2 (253-292)||(31162321-31162360)
chr2 (225-291)||(27404772-27404838)
chr2 (231-292)||(4580553-4580614)
chr2 (253-294)||(7098163-7098204)
chr2 (222-291)||(38575567-38575635)
chr2 (231-292)||(38972214-38972275)
[»] chr5 (14 HSPs)
chr5 (5-292)||(28866166-28866452)
chr5 (1-127)||(15974034-15974161)
chr5 (219-285)||(18768229-18768295)
chr5 (231-292)||(16717204-16717265)
chr5 (231-291)||(19645457-19645517)
chr5 (219-291)||(29986731-29986803)
chr5 (225-291)||(24441801-24441867)
chr5 (237-291)||(38054318-38054372)
chr5 (225-291)||(4819836-4819902)
chr5 (1-94)||(18768291-18768385)
chr5 (225-291)||(43541209-43541275)
chr5 (232-291)||(14316976-14317034)
chr5 (253-291)||(16633626-16633664)
chr5 (151-284)||(32632997-32633130)
[»] chr4 (19 HSPs)
chr4 (1-291)||(26494471-26494776)
chr4 (18-289)||(29096187-29096458)
chr4 (1-291)||(37986928-37987210)
chr4 (237-292)||(13442213-13442268)
chr4 (219-288)||(37818674-37818743)
chr4 (231-291)||(29924569-29924629)
chr4 (231-291)||(50070187-50070247)
chr4 (225-292)||(14968140-14968207)
chr4 (225-291)||(29132911-29132977)
chr4 (231-291)||(33226285-33226345)
chr4 (237-291)||(53436541-53436595)
chr4 (225-286)||(52489818-52489879)
chr4 (235-291)||(40704918-40704974)
chr4 (232-291)||(2930316-2930375)
chr4 (236-291)||(31523173-31523228)
chr4 (237-288)||(46851865-46851916)
chr4 (232-291)||(50720129-50720188)
chr4 (222-291)||(49497669-49497738)
chr4 (232-292)||(49908434-49908494)
[»] chr6 (6 HSPs)
chr6 (1-292)||(20612959-20613252)
chr6 (237-294)||(16125088-16125145)
chr6 (225-291)||(30590215-30590281)
chr6 (225-293)||(32786606-32786673)
chr6 (235-294)||(33582820-33582879)
chr6 (225-262)||(32125919-32125956)
[»] scaffold0060 (2 HSPs)
scaffold0060 (139-291)||(35843-35996)
scaffold0060 (1-109)||(35730-35841)
[»] chr3 (14 HSPs)
chr3 (36-285)||(1829449-1829676)
chr3 (151-291)||(4221284-4221424)
chr3 (222-291)||(145484-145553)
chr3 (225-289)||(8560022-8560086)
chr3 (231-291)||(47648996-47649056)
chr3 (231-290)||(24481806-24481865)
chr3 (232-291)||(43615981-43616040)
chr3 (237-291)||(43788859-43788913)
chr3 (219-292)||(20383497-20383570)
chr3 (231-291)||(1610035-1610095)
chr3 (231-291)||(21662155-21662215)
chr3 (232-292)||(29438554-29438614)
chr3 (231-293)||(11985284-11985348)
chr3 (231-291)||(42591310-42591369)
[»] chr8 (10 HSPs)
chr8 (153-291)||(33011816-33011954)
chr8 (232-290)||(24887989-24888047)
chr8 (209-291)||(27084263-27084345)
chr8 (225-291)||(35958799-35958865)
chr8 (232-291)||(24643625-24643684)
chr8 (225-291)||(35396547-35396613)
chr8 (235-292)||(30732006-30732063)
chr8 (66-127)||(33011970-33012031)
chr8 (222-294)||(10616839-10616911)
chr8 (235-287)||(35470486-35470538)
[»] chr7 (17 HSPs)
chr7 (300-373)||(5228827-5228900)
chr7 (225-291)||(44629505-44629571)
chr7 (232-291)||(19362705-19362764)
chr7 (237-291)||(7356216-7356270)
chr7 (231-293)||(12467572-12467634)
chr7 (231-288)||(12640304-12640361)
chr7 (232-292)||(31642893-31642953)
chr7 (232-291)||(27348212-27348271)
chr7 (237-288)||(34535246-34535297)
chr7 (231-293)||(12820370-12820432)
chr7 (225-291)||(18774801-18774867)
chr7 (231-292)||(21267835-21267896)
chr7 (231-291)||(40954851-40954911)
chr7 (231-287)||(21510283-21510339)
chr7 (231-291)||(26074929-26074988)
chr7 (231-291)||(26098716-26098775)
chr7 (252-292)||(47641850-47641890)
[»] chr1 (16 HSPs)
chr1 (237-291)||(10778453-10778507)
chr1 (231-291)||(14876784-14876844)
chr1 (174-290)||(23826154-23826270)
chr1 (234-289)||(28702233-28702288)
chr1 (234-293)||(34870650-34870709)
chr1 (233-288)||(29663840-29663895)
chr1 (232-291)||(52453677-52453736)
chr1 (225-291)||(3712791-3712857)
chr1 (231-291)||(29773725-29773785)
chr1 (216-288)||(52764677-52764749)
chr1 (228-291)||(11077150-11077213)
chr1 (225-291)||(44091211-44091276)
chr1 (209-290)||(171154-171234)
chr1 (59-115)||(10370904-10370960)
chr1 (253-292)||(34000322-34000362)
chr1 (231-291)||(50432575-50432635)
[»] scaffold0015 (1 HSPs)
scaffold0015 (225-291)||(64724-64790)
[»] scaffold0325 (1 HSPs)
scaffold0325 (231-291)||(19761-19821)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 30076508 - 30076218
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgtt 100  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||| |  ||||||||||| |  ||||||||||||||||||| ||||||| || |||    
T  30076508 gtataatttcaataacaatttagttgttgcagtggtaaggggtgccatgatttgggaaaggttgcaggttcaacactgcctagtcctctttttacaagtt 30076409  T
Q  101 ttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagatta 200  Q
    |||||||||||||||||||| ||||||        |||||||||||||  || ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30076408 ttatcttttacttttaaaaaatgtattaaaagaaacaattttgatgggattcaaacccacaatctcttgatgctttcaaaggatttatgccactagatta 30076309  T
Q  201 gctatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30076308 actatcatttattgttaatttttaaaactgtttaatatatattccatggaagtttggcactcctaaaaaatttactcaagatccgccactg 30076218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 5890499 - 5890708
Alignment:
Q  79 cctagtcttcttttttcatgttttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttca 178  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||        ||| |||||||||  | |||||||||||||  ||||| ||  |    
T  5890499 cctagtcttctatttacatattttatcttttacttttaaaaattgtattaaaaaaaccaactttgatgggatttgaacccacaatcttttgatgcttata 5890598  T
Q  179 aaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactca 278  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||||    
T  5890599 aaggatttatgccactagattagttattatttattgttagttcttaaaactggttaatatatattccatggaattttggcaccctcaaaagatttactca 5890698  T
Q  279 agatccgcca 288  Q
    ||||||||||    
T  5890699 agatccgcca 5890708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 17303267 - 17302996
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgtt 100  Q
    ||||||| |||||||  |||| ||||||| ||||||||| |||||||   |||||||||||| | ||||| |||| ||||||||||||||||| ||||||    
T  17303267 gtataatatcaataacaattcggttgttgtagtggtaagaggtgccataaattgggaaaggttgcgggttaaacagtgcctagtcttctttttacatgtt 17303168  T
Q  101 ttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagatta 200  Q
    |||||||||||||||||||||| ||||        |||||||||||||  | |||||||||||||| ||| | ||||||| ||||||||||| |||||||    
T  17303167 ttatcttttacttttaaaaattatatt-aaaaaaacaattttgatgggatttgaacccacaatctcttgaagctttcaaaagatttatgccattagatta 17303069  T
Q  201 gctatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagat 282  Q
      ||| ||||||| ||         |||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||    
T  17303068 attattatttattatt---------aactgtttaatatatattccatagaagtttggcatccctaaagaatttactcaagat 17302996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 5887927 - 5888010
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagt 84  Q
    ||||||| |||||||| |||  ||||||||||||||||||| ||| |   |||||||||||| | |||||||||| ||||||||    
T  5887927 gtataatatcaataataatttggttgttgcagtggtaagggatgctacaaattgggaaaggttgcgggttcaacagtgcctagt 5888010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 9615743 - 9615682
Alignment:
Q  231 tttaatatatattccatggaagttt-ggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||| ||| ||| ||||||||||| || || ||||||||||||||||||    
T  9615743 tttaatatatattccatagaaattttggcacccccaagaatttaactcaagatccgccactg 9615682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 12060077 - 12060133
Alignment:
Q  235 atatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||  ||||  ||||||||||||||| ||||| ||||||||||||||||||    
T  12060077 atatatatttgatggtggtttggcacccccaataaattcactcaagatccgccactg 12060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 4056266 - 4056207
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccact 290  Q
    ||||||||||||| ||| ||| |||||||||||||| || || |||||||||| ||||||    
T  4056266 tttaatatatatttcatagaaatttggcacccccaagaatttaactcaagatctgccact 4056207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 6590413 - 6590472
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| | | ||| |||||||||||| ||||||| | ||||||||||||||||    
T  6590413 ttaatatatattacgtagaaatttggcacccccgaaaaattaattcaagatccgccactg 6590472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 31162360 - 31162321
Alignment:
Q  253 tttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  31162360 tttggcacccccaacaaatttaatcaagatccgccactgc 31162321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 27404772 - 27404838
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| |||||| |||  || ||||| |||||||| ||||||  ||||||||||||||||    
T  27404772 aaactgtttaatttatattacatacaattttggtacccccaagaaattttttcaagatccgccactg 27404838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 4580614 - 4580553
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||||||||||||| |||  |  |||||||||||||| || || |||||||||||||||||||    
T  4580614 tttaatatatatttcatatatatttggcacccccaacaatttaactcaagatccgccactgc 4580553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 7098204 - 7098163
Alignment:
Q  253 tttggcacccccaaaaaatttactcaagatccgccactgctc 294  Q
    |||||||||||| ||||| ||| |||||||||||||||||||    
T  7098204 tttggcaccccctaaaaaattagtcaagatccgccactgctc 7098163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 38575635 - 38575567
Alignment:
Q  222 ttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||| ||||||||||||| ||| ||||||||||  |||||| ||||| | | ||||||||||||||    
T  38575635 ttaaaactatttaatatatatttcatagaagtttggc-gccccaacaaattaagttaagatccgccactg 38575567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 38972275 - 38972214
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    |||||||||||||||||  | |||||||| |||||| || || |||||||||||| ||||||    
T  38972275 tttaatatatattccatatatgtttggcatccccaacaatttaactcaagatccgtcactgc 38972214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 28866452 - 28866166
Alignment:
Q  5 aatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttat 104  Q
    |||||||||||  ||| |||||||||||||||||||||||||| | |  ||||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  28866452 aatttcaataacaatttagttgttgcagtggtaaggggtgccatgaacagggaaaggttgtgggttcaacactgcctaatcttctttttacatgttttat 28866353  T
Q  105 cttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagcta 204  Q
    |||||||||||||||||||||||        || |||||||||   ||| |||||||||||| ||||| |||||||| || |||||||||||||| | ||    
T  28866352 cttttacttttaaaaattgtattaaaaaaaacagttttgatggaattcggacccacaatctcttgatgctttcaaagtatatatgccactagatttgtta 28866253  T
Q  205 tcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  28866252 tcatttattgatagtttttaaaactgtttaatatatattccatagaagtttggca-ccccaaaaaatttactcaagatccgccactgc 28866166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 15974161 - 15974034
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttctttttt-catgt 99  Q
    |||| ||||||||||  ||| |||||||| ||||||||||| ||||| | | |||||||||||| || ||||||||||||||||||| |||||| |||||    
T  15974161 gtatgatttcaataacaatttagttgttgtagtggtaagggatgccatgaactgggaaaggtcgcggtttcaacactgcctagtctttttttttacatgt 15974062  T
Q  100 tttatcttttacttttaaaaattgtatt 127  Q
    ||||||||||||||||||||||||||||    
T  15974061 tttatcttttacttttaaaaattgtatt 15974034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 18768295 - 18768229
Alignment:
Q  219 tttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18768295 tttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttattcaagatccg 18768229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 16717204 - 16717265
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    |||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||    
T  16717204 tttaatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccactgc 16717265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 19645457 - 19645517
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||    
T  19645457 tttaatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccactg 19645517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 29986731 - 29986803
Alignment:
Q  219 tttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||| |||||| || | ||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||    
T  29986731 tttttgaaactggtttacatatatttcatggtggtttggcacccccaataaatttactcaagatccgccactg 29986803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 24441867 - 24441801
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||| ||||||||| || ||  |||||||||||||| ||| ||||||||||||||||||||    
T  24441867 aaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 24441801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 38054318 - 38054372
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  38054318 atatatttcatggtagtttggcatccccaacaaatttactcaagatccgccactg 38054372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 4819836 - 4819902
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||| ||||||||| || ||  |||| ||||||||| ||| ||||||||||||||||||||    
T  4819836 aaactgtttattatatattctatcgatatttgacacccccaacaaaattactcaagatccgccactg 4819902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 18768385 - 18768291
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaag-gggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttctttttt 94  Q
    |||||| ||| ||||  ||||| |||||||||||||||| |||||||| | | || |||||||||   ||||||||||| |||||||||||||||    
T  18768385 gtataaattctataacaattcaattgttgcagtggtaagtgggtgccatgaactgtgaaaggtcgcatgttcaacactgtctagtcttctttttt 18768291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 43541209 - 43541275
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||| ||||||||| || ||  |||||||||| ||| ||| ||||||||||||||||||||    
T  43541209 aaactgtttattatatattctatcgatatttggcaccctcaacaaaattactcaagatccgccactg 43541275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 14316976 - 14317034
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| ||| ||| ||||||| |||||||||| | ||||||||||||||||||    
T  14316976 ttaatatatatttcatagaattttggca-ccccaaaaaaataactcaagatccgccactg 14317034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 16633664 - 16633626
Alignment:
Q  253 tttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  16633664 tttggcacccccaacaaaattactcaagatccgccactg 16633626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 32633130 - 32632997
Alignment:
Q  151 tcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatgga 250  Q
    ||||||||||| |||| || |  |||||||  |||||| ||||||||   | ||| | ||||||||| || || |||| |||||||||||||| ||| ||    
T  32633130 tcgaacccacattctcttgcttctttcaaacaatttataccactagaccggttattaattattgttacttcttgaaaccgtttaatatatattacataga 32633031  T
Q  251 agtttggcacccccaaaaaatttactcaagatcc 284  Q
     | ||||||||||||| ||| | |||||| ||||    
T  32633030 tgattggcacccccaacaaaataactcaatatcc 32632997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 26494471 - 26494776
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttctttttt------ 94  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| | | |||||||||| || ||||||||||||||||||||| ||||||          
T  26494471 gtataatttcaataataatttagttgttgcagtggtaaggggtgccatgaactgggaaaggttgtaggttcaacactgcctagtcttattttttattttt 26494570  T
Q  95 ---------catgttttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatt 185  Q
             |||||||||||||||||||||||||||||||||        || ||||||||||  |||||||||||||||| |||||  |||||||||||    
T  26494571 ttttttcttcatgttttatcttttacttttaaaaattgtattaaaaaaaacagttttgatgggattcgaacccacaatctcttgatgcattcaaaggatt 26494670  T
Q  186 tatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccg 285  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26494671 tatgccactagattagttatcatttattgttagttcttaaaactgtttaatatatattccatgaaagtttggcacccccaaaaaatttactcaagatccg 26494770  T
Q  286 ccactg 291  Q
    ||||||    
T  26494771 ccactg 26494776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 29096187 - 29096458
Alignment:
Q  18 attcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaa 117  Q
    ||||||||| |||||||||||||||||||| | | |||||||||||| ||||||||||||||||| | ||| |||| |||||||||||||||||||||||    
T  29096187 attcagttgatgcagtggtaaggggtgccatgaactgggaaaggtcgcgggttcaacactgcctaattttcattttacatgttttatcttttacttttaa 29096286  T
Q  118 aaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgtta 217  Q
    ||||||||||        || |||||||| |  | |||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  29096287 aaattgtattaaaaaaaacagttttgatgagatttgaacccacaatctcttgatgctttcaaaggatttatgctactagattagttatcatttattgtta 29096386  T
Q  218 gtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccac 289  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  29096387 gtatttaaaactgtttaatatatattccatggaagtttggcaccccaaaaaattttacttaagatccgccac 29096458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 37987210 - 37986928
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgtt 100  Q
    ||||||| ||| |||  ||| |||||||||||||||||||||||||| | |||||||||||| |  ||||||| |||| |||||||||||||| |||       
T  37987210 gtataatctcattaacaatttagttgttgcagtggtaaggggtgccatgaattgggaaaggttgcaggttcaatactgtctagtcttctttttacat--- 37987114  T
Q  101 ttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagatta 200  Q
        |||||||||||||||||||||||        ||||| |||||||  || ||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  37987113 ----cttttacttttaaaaattgtatttaaaaaa-caattctgatgggattcaaacccacaatctcttgatgctttcaaaggatttatgccgctagatta 37987019  T
Q  201 gctatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37987018 gttatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgtcactg 37986928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 13442213 - 13442268
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  13442213 atatattccatagaagtttgacaccctcaaaaaatttactcaagatccgccactgc 13442268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 37818743 - 37818674
Alignment:
Q  219 tttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgcca 288  Q
    ||||||||| ||||| ||||||||| ||| |  ||||||||||||||| |||||||||||||||||||||    
T  37818743 tttttaaaattgttttatatatatttcatagtggtttggcacccccaacaaatttactcaagatccgcca 37818674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 29924569 - 29924629
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||| ||| |||||||| |||||||||||| || ||||||||||||||||||    
T  29924569 tttaatatatatttcatagaagtttgacacccccaaaaatttaactcaagatccgccactg 29924629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 50070187 - 50070247
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||| ||| |||||||||||||||||| ||||| | ||||||||||||||||    
T  50070187 tttaatatatattacatagaagtttggcacccccaacaaattaagtcaagatccgccactg 50070247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 14968140 - 14968207
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    |||||||||| ||||||||| || ||  |||||||||||||| ||| |||||||||||||||||||||    
T  14968140 aaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactgc 14968207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 29132911 - 29132977
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||| ||||||||| || ||  |||||||||||||| ||| ||||||||||||||||||||    
T  29132911 aaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 29132977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 33226285 - 33226345
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||| ||| |||||||||||||||||| || || | ||||||||||||||||    
T  33226285 tttaatatatattacatagaagtttggcacccccaacaatttaagtcaagatccgccactg 33226345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 53436595 - 53436541
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||| |||||  |||||||||||| || ||||||||||||||||||||||||    
T  53436595 atatatttcatggtggtttggcacccctaataaatttactcaagatccgccactg 53436541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 52489879 - 52489818
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgc 286  Q
    |||| |||||||||| ||||||| |||||||| |||||| || ||||| |||||||||||||    
T  52489879 aaaccgtttaatatacattccatagaagtttgacacccctaacaaattaactcaagatccgc 52489818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 40704918 - 40704974
Alignment:
Q  235 atatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| | ||||||||||||||||| |||||||   ||||||||||||||    
T  40704918 atatatattccaggcaagtttggcacccccaacaaatttagctaagatccgccactg 40704974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 2930375 - 2930316
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||| ||||||||| | |||||||||||| ||| ||||| ||| ||||||||||||||    
T  2930375 ttaatacatattccataggagtttggcaccctcaataaattaactgaagatccgccactg 2930316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 31523173 - 31523228
Alignment:
Q  236 tatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||  ||||||||||| ||||| ||||| ||||||||||| ||||||    
T  31523173 tatatattccataaaagtttggcactcccaacaaattaactcaagatccaccactg 31523228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 46851916 - 46851865
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgcca 288  Q
    ||||||| |||  ||||||||||||||||| ||||| |||||||||||||||    
T  46851916 atatatttcataaaagtttggcacccccaacaaattaactcaagatccgcca 46851865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 50720188 - 50720129
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| ||| ||| |||||||||| ||| ||| | ||||||||||||||||||    
T  50720188 ttaatatatatttcatagaattttggcacccacaagaaaataactcaagatccgccactg 50720129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 49497669 - 49497738
Alignment:
Q  222 ttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||  ||||||||||||| |||  | ||||| ||||||||| || || ||||||||||||||||||    
T  49497669 ttaaaaccatttaatatatatttcatatatgtttgacacccccaacaatttaactcaagatccgccactg 49497738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 49908494 - 49908434
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    |||||||||||| ||| ||| ||||| |||||| | ||| | |||||||||||||||||||    
T  49908494 ttaatatatatttcatagaattttggtacccccgagaaaataactcaagatccgccactgc 49908434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 20613252 - 20612959
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaagg-tcgtgggttcaacactgcctagtcttctttttt-catg 98  Q
    |||||||||||||||  ||||||||||||  ||||||||||||||||   ||||||  ||| | |  |||||||||||||||||||||||||||  ||||    
T  20613252 gtataatttcaataacaattcagttgttgtggtggtaaggggtgccataaattggggtagggtggcaggttcaacactgcctagtcttctttttaacatg 20613153  T
Q  99 ttttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagat 198  Q
    |||||| ||||||||||||||||||||||        ||||||| |||||  | |||||||||||||| ||||| |||||||||||||||| ||||||||    
T  20613152 ttttattttttacttttaaaaattgtattaaaataaacaattttaatgggatttgaacccacaatctcttgatgctttcaaaggatttatgtcactagat 20613053  T
Q  199 tagctatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20613052 tagttattatttatttttagttattaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 20612959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 16125145 - 16125088
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgctc 294  Q
    ||||||| |||||  ||||||||||||| | |||||||||||||||||||||||||||    
T  16125145 atatatttcatggtggtttggcacccccgataaatttactcaagatccgccactgctc 16125088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 30590281 - 30590215
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||| ||||||||||||| | | |  |||||||||||||||||| | ||||||||||||||||||    
T  30590281 aaactgattaatatatattctacgaatatttggcacccccaaaaaaataactcaagatccgccactg 30590215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 32786673 - 32786606
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgct 293  Q
    |||| |||||||||||||||||| |||||||| || ||| || ||||| ||||||||||||||| ||||    
T  32786673 aaaccgtttaatatatattccatagaagtttgaca-ccctaacaaattaactcaagatccgccattgct 32786606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 33582820 - 33582879
Alignment:
Q  235 atatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgctc 294  Q
    |||||||||||||    ||||||||||||||||||| | | |||||||||||||||||||    
T  33582820 atatatattccataactgtttggcacccccaaaaaaataaatcaagatccgccactgctc 33582879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 32125956 - 32125919
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcaccc 262  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  32125956 aaaccgtttaatatatattccatagaagtttggcaccc 32125919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 139 - 291
Target Start/End: Original strand, 35843 - 35996
Alignment:
Q  139 ttttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatat 238  Q
    ||||||||||  || ||||||||||| | ||||| ||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  35843 ttttgatggggttcaaacccacaatcgcttgatgctttcaaaggatttatgccactagattagtcattatttattgttagtttttaaaactgtttaatat 35942  T
Q  239 atattccatggaagtttggcaccccc-aaaaaatttactcaagatccgccactg 291  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  35943 atatttcatggaagtttggcacccccaaaaaaatttactcaagatccgccactg 35996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 35730 - 35841
Alignment:
Q  1 gtataatttcaataatgattcagttgttgcagtggtaaggggtgccaggtattgggaaaggt--cgtgggttcaacactgcctagtcttcttttt-tcat 97  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||   |||||||||||||| |||||||||||||||  |||    
T  35730 gtataatttcaataataattcagttgttgcagtggtaaggggtgccatgaattgggaaaggttgtgtgggttcaacacttcctagtcttctttttaacat 35829  T
Q  98 gttttatctttt 109  Q
    ||||||||||||    
T  35830 gttttatctttt 35841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 1829449 - 1829676
Alignment:
Q  36 taaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtattnnnnnnnn 135  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||                   
T  1829449 taaggggtgccataaattgggaaaggtcgtgggttcaacactgcctagtcttctttttacatgttttattttttacttttaaaaa------------aaa 1829536  T
Q  136 caattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaa 235  Q
    |||||||||||||  |||||||||||||||| ||||| |||||||| |||||||||           ||| |||||||||||||| |||||||||||| |    
T  1829537 caattttgatgggattcgaacccacaatctcttgatgctttcaaagaatttatgcc----------ttattatttattgttagttcttaaaactgtttga 1829626  T
Q  236 tatatattccatggaagtttggcacccccaaaaaatttactcaagatccg 285  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||||||    
T  1829627 tatatattccatagaagtttgacaccccaaaaaaatttactcaagatccg 1829676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 4221284 - 4221424
Alignment:
Q  151 tcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatgga 250  Q
    |||||||||||  ||| || | ||||||||  |||||| ||||||| |  | ||| | ||||| ||| || || ||||||||||||||||||| ||| ||    
T  4221284 tcgaacccacatcctcttgctcttttcaaaaaatttataccactaggtcggttattaattattattacttcttgaaactgtttaatatatatttcataga 4221383  T
Q  251 agtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||||||| ||||| | ||||||||||||||||    
T  4221384 agtttggcacccccaacaaattaattcaagatccgccactg 4221424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 145484 - 145553
Alignment:
Q  222 ttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||  ||||||||||||| ||| |||||||||||||||||| ||||| | ||||||||||||||||    
T  145484 ttaaaaccatttaatatatattacatagaagtttggcacccccaacaaattaagtcaagatccgccactg 145553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 8560086 - 8560022
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccac 289  Q
    ||||||||||||||| ||| ||| |  ||||||||||||||| ||||||||||||||||||||||    
T  8560086 aaactgtttaatatacatttcatagtggtttggcacccccaacaaatttactcaagatccgccac 8560022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 47649056 - 47648996
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||| ||| |||||||||||||| || || ||||||||||||||||||    
T  47649056 tttaatatatattccatagaaatttggcacccccaagaatttaactcaagatccgccactg 47648996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 24481865 - 24481806
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccact 290  Q
    ||||||||||||||||| |||||||| ||||| |||||| || |||||||||||||||||    
T  24481865 tttaatatatattccatagaagtttgacaccctcaaaaatttaactcaagatccgccact 24481806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 43615981 - 43616040
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||  ||||||| ||||||||| ||||| ||||||||||||||||||    
T  43615981 ttaatatatattccataaaagtttgacacccccaacaaattaactcaagatccgccactg 43616040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 43788913 - 43788859
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||    
T  43788913 atatatttcatggtggtttggcacccccaagaaatttactcaagatccgccactg 43788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 20383570 - 20383497
Alignment:
Q  219 tttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||||| |||||| || | ||||||| |||||  ||||||||||||||| ||| |||||||||||||||||||||    
T  20383570 tttttgaaactgatttagatatatttcatggtggtttggcacccccaataaaattactcaagatccgccactgc 20383497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 1610035 - 1610095
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||||||||  ||||||||||||||||  || || | ||||||||||||||||    
T  1610035 tttaatatatattccataaaagtttggcacccccagcaatttaagtcaagatccgccactg 1610095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 21662215 - 21662155
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||| ||| |||||||| ||||  || || ||||||||||||||||||    
T  21662215 tttaatatatattccatagaaatttggcactcccaggaatttaactcaagatccgccactg 21662155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 29438554 - 29438614
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||||||||||||||||  ||||||| ||| ||||| ||||| ||||||||| |||||||||    
T  29438554 ttaatatatattccataaaagtttgacactcccaacaaattaactcaagattcgccactgc 29438614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 11985348 - 11985284
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaa--tttactcaagatccgccactgct 293  Q
    |||||||||||||| || ||| |||||||| ||||| |||  || ||||||||||||||||||||    
T  11985348 tttaatatatattcaatagaaatttggcactcccaagaaaagttaactcaagatccgccactgct 11985284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 42591310 - 42591369
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||| |||||||  || ||| || ||||| ||||||||||||||||||    
T  42591310 tttaatatatattccatagaagtttaacatccc-aacaaattaactcaagatccgccactg 42591369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 33011954 - 33011816
Alignment:
Q  153 gaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatggaag 252  Q
    |||||||||||||| ||  | |||||||| |||||||||| |||| ||| ||| |||| |||||| || |||||||||||||||||||||||||| ||||    
T  33011954 gaacccacaatctcttgtggctttcaaagaatttatgccattagactagttattatttgttgttatttcttaaaactgtttaatatatattccatagaag 33011855  T
Q  253 tttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||  |||||||| ||||||| |||||||||| |||||    
T  33011854 tttgatacccccaacaaatttattcaagatccgtcactg 33011816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 24888047 - 24887989
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccact 290  Q
    ||||||||||||||||  || |||||||||||||| ||||| |||||||||||||||||    
T  24888047 ttaatatatattccataaaattttggcacccccaacaaattaactcaagatccgccact 24887989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 27084345 - 27084263
Alignment:
Q  209 ttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||| |  |||||||  ||| |||||||||||||  ||||||||||||||||| ||||| ||||||||| ||||||||    
T  27084345 ttattgttaatacttaaaaccatttgatatatattccataaaagtttggcacccccaacaaattaactcaagattcgccactg 27084263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 35958865 - 35958799
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||| ||||||||| || ||  |||||||||||||| ||| ||||||||||||||||||||    
T  35958865 aaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 35958799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 24643684 - 24643625
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| | | ||| |||||||||||||||||||| | ||||||||||||||||    
T  24643684 ttaatatatattacgtagaaatttggcacccccaaaaaattaagtcaagatccgccactg 24643625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 35396547 - 35396613
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||| || |||||||||  ||||  ||||||||||||||| ||||| ||||||||||||||||||    
T  35396547 aaactgatttatatatatttgatggtggtttggcacccccaataaattcactcaagatccgccactg 35396613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 30732063 - 30732006
Alignment:
Q  235 atatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||||||||| |||  || |||||||||||||| | ||||| |||||||||||||||||    
T  30732063 atatatattacatacaattttggcacccccaacagatttaatcaagatccgccactgc 30732006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 33012031 - 33011970
Alignment:
Q  66 gggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtatt 127  Q
    |||||||||||| |||| | || ||||| ||| |||||||||||| ||||| ||||||||||    
T  33012031 gggttcaacactacctaatgttttttttacatattttatcttttaattttacaaattgtatt 33011970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 10616839 - 10616911
Alignment:
Q  222 ttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgctc 294  Q
    ||||||||||||||||| ||||||||  |  ||||||||| |||| ||| | | |||||||||| ||||||||    
T  10616839 ttaaaactgtttaatatttattccataaatatttggcacctccaacaaaataattcaagatccgtcactgctc 10616911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 35470486 - 35470538
Alignment:
Q  235 atatatattccatggaagtttggcacccccaaaaaatttactcaagatccgcc 287  Q
    |||||||||  ||||  ||||| ||||||||| ||||||||||||||||||||    
T  35470486 atatatattttatggtggtttgacacccccaataaatttactcaagatccgcc 35470538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 5228827 - 5228900
Alignment:
Q  300 ctaatttatagacatccctgtttgcttgtctcggactaaactccacctttaagttatcaaaattagactatacc 373  Q
    ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5228827 ctaatttataggcatccccgtttgcttgtctcggactaaactctacctttaagttatcaaaattagactatacc 5228900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 44629505 - 44629571
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||| |||||||||||||||||| |||||||||||||||| | ||||  ||||||||||||||||||    
T  44629505 aaaccgtttaatatatattccatagaagtttggcaccccctacaaatcaactcaagatccgccactg 44629571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 19362705 - 19362764
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||  ||||||||||||||||| ||| | ||||||||||||||||||    
T  19362705 ttaatatatattccataaaagtttggcacccccaacaaaataactcaagatccgccactg 19362764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 7356216 - 7356270
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||    
T  7356216 atatatttcatggtggtttggcacccccaataaatttactcaagatccgccactg 7356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 12467634 - 12467572
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgct 293  Q
    |||||||||||||||||  | ||||||||||||||| || || ||||||||||||||||||||    
T  12467634 tttaatatatattccatatatgtttggcacccccaacaatttaactcaagatccgccactgct 12467572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 12640361 - 12640304
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgcca 288  Q
    |||||||||||||||||  ||||||||||||||| | ||||| |||||||||||||||    
T  12640361 tttaatatatattccataaaagtttggcacccccgacaaattaactcaagatccgcca 12640304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 31642893 - 31642953
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||||||||||||||||  |||||||||| |||||| ||||| |||||||||| ||||||||    
T  31642893 ttaatatatattccataaaagtttggcatccccaacaaattaactcaagatctgccactgc 31642953  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 27348212 - 27348271
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| |||  || |||||||||||||| ||||||||||||||||||| ||||    
T  27348212 ttaatatatatttcataaaattttggcacccccaacaaatttactcaagatccgctactg 27348271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 34535246 - 34535297
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgcca 288  Q
    ||||||| |||||  ||||||||||||||| |||||||||||||||||||||    
T  34535246 atatatttcatggtggtttggcacccccaataaatttactcaagatccgcca 34535297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 12820432 - 12820370
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgct 293  Q
    ||||||||||||| |||  | ||||||||||||||| || || ||||||||||||||||||||    
T  12820432 tttaatatatatttcatatatgtttggcacccccaacaatttaactcaagatccgccactgct 12820370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 18774801 - 18774867
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||| ||||||| | || ||  |||||||||||||| ||| ||||||||||||||||||||    
T  18774801 aaactgtttattatatatgctatcgatatttggcacccccaacaaaattactcaagatccgccactg 18774867  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 21267835 - 21267896
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    |||||||||||||| || ||| |||||||||||||| || || | |||||||||||||||||    
T  21267835 tttaatatatattctatagaaatttggcacccccaagaatttaattcaagatccgccactgc 21267896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 40954911 - 40954851
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||| |||  | ||||||||||||||| || || ||||||||||||||||||    
T  40954911 tttaatatatatttcatatatgtttggcacccccaacaatttaactcaagatccgccactg 40954851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 21510283 - 21510339
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgcc 287  Q
    ||||||||||||| ||| |  ||||| ||||||||| |||| |||||||||||||||    
T  21510283 tttaatatatatttcatagtggtttgacacccccaacaaatatactcaagatccgcc 21510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 26074988 - 26074929
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||| | | |||| || ||| |||||||||||| ||||||||||||||    
T  26074988 tttaatatatattccataggaatttgacatccc-aaaaaatttacttaagatccgccactg 26074929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 26098775 - 26098716
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||| | | |||| || ||| |||||||||||| ||||||||||||||    
T  26098775 tttaatatatattccataggaatttgacatccc-aaaaaatttacttaagatccgccactg 26098716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 47641890 - 47641850
Alignment:
Q  252 gtttggcacccccaaaaaatttactcaagatccgccactgc 292  Q
    ||||| ||||||||| ||||||||||| |||||||||||||    
T  47641890 gtttgacacccccaacaaatttactcaggatccgccactgc 47641850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 10778453 - 10778507
Alignment:
Q  237 atatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10778453 atatatttcatggtagtttggcacccccaacaaatttactcaagatccgccactg 10778507  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 14876844 - 14876784
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||| ||| |||||||||||||||||| ||||| | ||||||||||||||||    
T  14876844 tttaatatatattacatagaagtttggcacccccaacaaattaagtcaagatccgccactg 14876784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 23826154 - 23826270
Alignment:
Q  174 tttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaattt 273  Q
    |||||||  |||||| ||||||||  || ||| | ||||||||| || || |||  |||||||||||||||||| |||||||||||||| ||| || ||     
T  23826154 tttcaaataatttataccactagaccagttattaattattgttacttcttgaaatcgtttaatatatattccatagaagtttggcacccacaataagtta 23826253  T
Q  274 actcaagatccgccact 290  Q
    |||||||||| ||||||    
T  23826254 actcaagatctgccact 23826270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 28702288 - 28702233
Alignment:
Q  234 aatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccac 289  Q
    ||||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||    
T  28702288 aatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccac 28702233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 34870650 - 34870709
Alignment:
Q  234 aatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactgct 293  Q
    |||||||||||||| |||||||| ||||||||| || |||||||||||||| ||||||||    
T  34870650 aatatatattccatagaagtttgacacccccaacaattttactcaagatccaccactgct 34870709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 29663895 - 29663840
Alignment:
Q  233 taatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgcca 288  Q
    |||||||||||||||  ||||||||||||||||  ||||| |||||||||||||||    
T  29663895 taatatatattccataaaagtttggcacccccagcaaattaactcaagatccgcca 29663840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 52453736 - 52453677
Alignment:
Q  232 ttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||  ||||||||||||||||| ||||| |||||| ||||| |||||    
T  52453736 ttaatatatattccataaaagtttggcacccccaacaaattaactcaaaatccgtcactg 52453677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 3712791 - 3712857
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||| ||||||||||||| | | |  |||||||||||||||||| | ||||||||||||||||||    
T  3712791 aaactgattaatatatattctacgaatatttggcacccccaaaaaaataactcaagatccgccactg 3712857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 29773725 - 29773785
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||||||| ||| |||||||||||||| || || ||||||||| || |||||    
T  29773725 tttaatatatattccatagaaatttggcacccccaagaatttaactcaagattcgtcactg 29773785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 52764677 - 52764749
Alignment:
Q  216 tagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgcca 288  Q
    |||| ||| |||||||||| ||||||||| || ||  |||||||||||||  ||| |||||||||||||||||    
T  52764677 tagtgtttgaaactgtttattatatattctatcgatatttggcacccccaccaaaattactcaagatccgcca 52764749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 11077150 - 11077213
Alignment:
Q  228 ctgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||| |||||| ||||  | ||||| |||| ||| ||||||||||||||||||||||||    
T  11077150 ctgtttaatttatattacatgctattttggtaccctcaacaaatttactcaagatccgccactg 11077213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 44091211 - 44091276
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||| |||||| |||  || ||||| ||||| || ||||||||||||||||||||||||    
T  44091211 aaactgtttaatttatattacatacaattttggtacccc-aacaaatttactcaagatccgccactg 44091276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 171154 - 171234
Alignment:
Q  209 ttattgttagtttttaaaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccact 290  Q
    ||||||||| | ||| ||||  |||||||||||||||||  | |||||||| ||| || ||||| |||||||||||||||||    
T  171154 ttattgttaatatttgaaacaatttaatatatattccataaaggtttggcatccc-aacaaattaactcaagatccgccact 171234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 10370904 - 10370960
Alignment:
Q  59 aggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttactttt 115  Q
    ||||||| ||||||||||  ||| ||||||||||| ||| ||| |||||||||||||    
T  10370904 aggtcgtcggttcaacacctcctcgtcttctttttacatatttaatcttttactttt 10370960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 34000322 - 34000362
Alignment:
Q  253 tttggcacccccaa-aaaatttactcaagatccgccactgc 292  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  34000322 tttggcacccccaataaaatttaatcaagatccgccactgc 34000362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 50432575 - 50432635
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||||||||||  |  |||||||||||||| || || ||||||||||||| ||||    
T  50432575 tttaatatatattccatatatatttggcacccccaacaatttaactcaagatccgcaactg 50432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 64724 - 64790
Alignment:
Q  225 aaactgtttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    |||||||||| ||||||||| || ||  |||||||||||||| ||| ||||||||||||||||||||    
T  64724 aaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 64790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 19821 - 19761
Alignment:
Q  231 tttaatatatattccatggaagtttggcacccccaaaaaatttactcaagatccgccactg 291  Q
    ||||||||||||| ||| |||||||||||||||||| || || | ||||||||||||||||    
T  19821 tttaatatatattacatagaagtttggcacccccaacaatttaagtcaagatccgccactg 19761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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