View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_24 (Length: 379)
Name: NF14040_low_24
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 37915087 - 37915450
Alignment:
| Q |
1 |
cattcaaatcaccattctacctaactctggcttctctatatgtctcgcgcttaaacacgttgttgcagacggaaaatcacttcatcatttcatgaaattt |
100 |
Q |
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| T |
37915087 |
cattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatttcatgaaattt |
37915186 |
T |
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| Q |
101 |
tgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttgatcttccttcccatgaaagagatagcgtactta |
200 |
Q |
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| T |
37915187 |
tgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttgatcttccttcccatgaaagagatagagtactta |
37915286 |
T |
|
| Q |
201 |
aacacccaacgtctcctaaactcaactactttcaagaaatacaatattttgtattggaaatcatgaaatccacaagtctagttcgagatgcagcttatgc |
300 |
Q |
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| T |
37915287 |
aacacccaacggctcctaaactcaactactttcaagaaatacaatattttgtattggaaatcatgaaatccacaagtctagttcgagatgcagcttatgc |
37915386 |
T |
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| Q |
301 |
taacaaagtacgaactagtttagtattgagtcgtgaagaagttcagaaaatgaagggatggatc |
364 |
Q |
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| T |
37915387 |
taacaaagtacgaactagtttagtattgagtcgtgaagaagttcagaaaatgaagggatggatc |
37915450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 163 - 349
Target Start/End: Original strand, 37907076 - 37907262
Alignment:
| Q |
163 |
tcttgatcttccttcccatgaaagagatagcgtacttaaacacccaacgtctcctaaactcaactactttcaagaaatacaatattttgtattggaaatc |
262 |
Q |
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| T |
37907076 |
tcttgatcttccttcccatgaaaggcatagattacttaaagatccaaaggctcctaaactcgcctacttgcaagaaatacaagattatgtattaaaaaac |
37907175 |
T |
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| Q |
263 |
atgaaatccacaagtctagttcgagatgcagcttatgctaacaaagtacgaactagtttagtattgagtcgtgaagaagttcagaaa |
349 |
Q |
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| T |
37907176 |
atggaattcacaagtctcgttcgagatggagcttacgctaacaaggtacgaactagtttagtattgagtcgtgaagaagttcagaaa |
37907262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 37961086 - 37960950
Alignment:
| Q |
59 |
gttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgag---ttgtctcttgaatact |
155 |
Q |
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|||| ||||||||||||||||||||| |||||| ||||||||||||| | | |||| ||||| ||| |||| |||||| | |||||||||||||||| |
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| T |
37961086 |
gttgctgcagacggaaaatcacttcaccatttcgtgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctcttgaatact |
37960987 |
T |
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| Q |
156 |
ctccgcctcttgatcttccttcccatgaaagagatag |
192 |
Q |
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| T |
37960986 |
ctccgcctcttgatcttccttcacatgaaagagatag |
37960950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 37906982 - 37907030
Alignment:
| Q |
59 |
gttgttgcagacggaaaatc--acttcatcatttcatgaaattttgggc |
105 |
Q |
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|||| |||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
37906982 |
gttgctgcatacggaaaatcgtacttcatcatttcatgaaattttgggc |
37907030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 3783196 - 3783390
Alignment:
| Q |
1 |
cattcaaatcaccattctacctaactctggcttctctatatgtctcgcgcttaaacacgttgttgcagacggaaaatcacttcatcatttcatgaaattt |
100 |
Q |
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||||||| |||||||||||||||||||||| ||| |||| || ||| || |||| ||| ||| | || |||||||||||||| || ||||||||| | |
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| T |
3783196 |
cattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaatcacttcaccaattcatgaaactc |
3783295 |
T |
|
| Q |
101 |
tgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga---tcttccttcccatgaaagagatag |
192 |
Q |
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||| ||| |||||||||| | | ||| | ||||||| || ||||| ||| |||||| ||||||||| ||||||||| |||||||||||||| |
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| T |
3783296 |
tggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatcttcttccttcacatgaaagagatag |
3783390 |
T |
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