View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14040_low_26 (Length: 361)
Name: NF14040_low_26
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 19157512 - 19157836
Alignment:
| Q |
15 |
gagaagaatgtgaggaatcatacctgtctagtgaaaatcaatctactactcaagatgttcgaccagaacatcttggtttaactggttcaggatcaggtgg |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19157512 |
gagaagaatgtgaggaatcatacatgtctggtgaaaatctatctgctgctcaagatgttcgaccagaacatcttggtttgactggttcaggatcaggtgg |
19157611 |
T |
|
| Q |
115 |
cagatatgtgtctagaggggcagtgggaacctgttttatgcgttgtctgacatatataaattctggcttgtaacattctatagattaaagcataatagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19157612 |
cagatatgtgtctagaggggcagtgggaacttgttttatgcgttgtctgacatatacaaattctgccttgtaacattctatagattaaagcataatagaa |
19157711 |
T |
|
| Q |
215 |
aaattaatttggaagaatagcaatatcatttatgtc-agaaaaataaaatgaaacatgaattgactaccaaaaaatgtaacattcttcgaaacttgaaag |
313 |
Q |
| |
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| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
19157712 |
a----aatttggaagaatagcaatatcatttatgtcaagaaaaataaaatgaaacatgaattgactaccaaaaaatgtaacattcttcgaaactgggaag |
19157807 |
T |
|
| Q |
314 |
cgatgattagaaacatcataacacacaaa |
342 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |
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|
| T |
19157808 |
caatgatcagaaacatcataacacacaaa |
19157836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 17604373 - 17604698
Alignment:
| Q |
15 |
gagaagaatgtgaggaatcatacctgtctagtgaaaatcaatctactactcaagatgttcgaccagaacatcttggtttaactggttcaggatcaggtgg |
114 |
Q |
| |
|
|||||| |||| |||||||||| ||||| ||||| ||| |||| | ||| ||||||||||||||| | |||| ||| || ||||||||||||||||| |
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| T |
17604373 |
gagaagtatgtttggaatcatacatgtctggtgaatatctatctggtgctcgagatgttcgaccagagcgtcttagttggaccggttcaggatcaggtgg |
17604472 |
T |
|
| Q |
115 |
cagatatgtgtctagaggggcagtgggaacctgttttatgcgttgtctgacatatataaattctggcttgtaacattctatagattaaagcataatagaa |
214 |
Q |
| |
|
| | | ||||| |||||||||||||||||||||||||||||| | |||||||| |||| || ||||||||| ||||||||||| | ||| ||||| | |
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|
| T |
17604473 |
cggctcagtgtcgggaggggcagtgggaacctgttttatgcgttttttgacatatgaaaatgctcgcttgtaacgttctatagattgaggcacaatagga |
17604572 |
T |
|
| Q |
215 |
aaattaatttggaagaatagcaatatcatttatgtcagaa-aaataaaatgaaacatgaattgactaccaaaaaatgtaacattcttcgaaacttgaaag |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| | ||| |
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|
| T |
17604573 |
aaattg----ggaagaatagcaatatcatttatgtcagcagaaatagaatgaaacatgaattgattatcaaaaaatgtaacattcctcgaaactcggaag |
17604668 |
T |
|
| Q |
314 |
cgatgattagaaacatcataacacacaaat |
343 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| |
|
|
| T |
17604669 |
cgatgattagagacatcataaaacataaat |
17604698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 28 - 342
Target Start/End: Original strand, 26624821 - 26625132
Alignment:
| Q |
28 |
ggaatcatacctgtctagtgaaaatcaatctactactcaagatgttcgaccagaacatcttggtttaactggttcaggatcaggtggcagatatgtgtct |
127 |
Q |
| |
|
|||||||||||||||| | ||||||| |||| | ||| ||||||||||||||||| |||||||| ||||||||||||||||||||| | | ||||| |
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|
| T |
26624821 |
ggaatcatacctgtctggggaaaatctatctggtgctcgagatgttcgaccagaacgtcttggttcgactggttcaggatcaggtggcggctcagtgtcg |
26624920 |
T |
|
| Q |
128 |
agaggggcagtgggaacctgttttatgcgttgtctgacatatataaattctggcttgtaacattctatagattaaagcataatagaaaaattaatttgga |
227 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||||||||||||||| ||| |
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|
| T |
26624921 |
gaaggggcagtaggaacctgtttaatgcgttgtctgacatatgtaaatcctggcttgtaacgttctatagattgaggcataatagaaaaattg----gga |
26625016 |
T |
|
| Q |
228 |
agaatagcaatatcatttatgtcagaa-aaataaaatgaaacatgaattgactaccaaaaaatgtaacattcttcgaaacttgaaagcgatgattagaaa |
326 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| | |||||||||||||| | |
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|
| T |
26625017 |
agaatagcaatatcatttatgtcaggagaaatagaatgaaacatgaattgattatcaaaaaatgtaacattcctcgaaactcgtaagcgatgattagaga |
26625116 |
T |
|
| Q |
327 |
catcataacacacaaa |
342 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
26625117 |
catcataacaaacaaa |
26625132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 28 - 342
Target Start/End: Complemental strand, 49119298 - 49118987
Alignment:
| Q |
28 |
ggaatcatacctgtctagtgaaaatcaatctactactcaagatgttcgaccagaacatcttggtttaactggttcaggatcaggtggcagatatgtgtct |
127 |
Q |
| |
|
|||||||||||||||| | ||||||| |||| | ||| ||||||||||||||||| |||||||| ||||||||||||||||||||| | | ||||| |
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|
| T |
49119298 |
ggaatcatacctgtctggggaaaatctatctggtgctcgagatgttcgaccagaacgtcttggttcgactggttcaggatcaggtggcggctcagtgtcg |
49119199 |
T |
|
| Q |
128 |
agaggggcagtgggaacctgttttatgcgttgtctgacatatataaattctggcttgtaacattctatagattaaagcataatagaaaaattaatttgga |
227 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||||||||||||||| ||| |
|
|
| T |
49119198 |
gaaggggcagtaggaacctgtttaatgcgttgtctgacatatgtaaatcctggcttgtaacgttctatagattgaggcataatagaaaaattg----gga |
49119103 |
T |
|
| Q |
228 |
agaatagcaatatcatttatgtcagaa-aaataaaatgaaacatgaattgactaccaaaaaatgtaacattcttcgaaacttgaaagcgatgattagaaa |
326 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| | |||||||||||||| | |
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|
| T |
49119102 |
agaatagcaatatcatttatgtcaggagaaatagaatgaaacatgaattgattatcaaaaaatgtaacattcctcgaaactcgtaagcgatgattagaga |
49119003 |
T |
|
| Q |
327 |
catcataacacacaaa |
342 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
49119002 |
catcataacaaacaaa |
49118987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 26634271 - 26634543
Alignment:
| Q |
67 |
agatgttcgaccagaacatcttggtttaactggttcaggatcaggtggcagatatgtgtctagaggggcagtgggaacctgttttatgcgttgtctgaca |
166 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||| | | ||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26634271 |
agatgttcgaccagaacgtcttggttcgactggttcaggatcaggtggcggctcagtgtcggaaggggcagtaggaacctgtttaatgcgttgtctgaca |
26634370 |
T |
|
| Q |
167 |
tatataaattctggcttgtaacattctatagattaaagcataatagaaaaattaatttggaagaatagcaatatcatttatgtcagaa-aaataaaatga |
265 |
Q |
| |
|
||| ||||| |||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||| |
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|
| T |
26634371 |
tatgtaaatcctggcttgtaacgttctatagattgaggcataatagaaaaattg----ggaagaatagcaatatcatttatgtcaggagaaatagaatga |
26634466 |
T |
|
| Q |
266 |
aacatgaattgactaccaaaaaatgtaacattcttcgaaacttgaaagcgatgattagaaacatcataacacacaaa |
342 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
26634467 |
aacatgaattgattatcaaaaaatgtaacattcctcgaaactcataagcgatgattagagacatcataacaaacaaa |
26634543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 342
Target Start/End: Original strand, 35935670 - 35935977
Alignment:
| Q |
32 |
tcatacctgtctagtgaaaatcaatctactactcaagatgttcgaccagaacatcttggtttaactggttcaggatcaggtggcagatatgtgtctagag |
131 |
Q |
| |
|
|||||||| ||| | ||||||| |||| | ||| ||||||||||||||||| |||||||| ||||||||||||||||||||| | | ||||| || |
|
|
| T |
35935670 |
tcatacctatctggggaaaatctatctggtgctcgagatgttcgaccagaacgtcttggttcgactggttcaggatcaggtggcggctcagtgtcggaag |
35935769 |
T |
|
| Q |
132 |
gggcagtgggaacctgttttatgcgttgtctgacatatataaattctggcttgtaacattctatagattaaagcataatagaaaaattaatttggaagaa |
231 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
35935770 |
gggcagtaggaacctgtttaatgcgttgtctgacatatgtaaatcctggcttgtaacgttctatagattgaggcataatagaaaaattg----ggaagaa |
35935865 |
T |
|
| Q |
232 |
tagcaatatcatttatgtcagaa-aaataaaatgaaacatgaattgactaccaaaaaatgtaacattcttcgaaacttgaaagcgatgattagaaacatc |
330 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| | |||||||||||||| ||||| |
|
|
| T |
35935866 |
tagcaatatcatttatgtcaggagaaatagaatgaaacatgaattgattatcaaaaaatgtaacattcctcgaaactcgtaagcgatgattagagacatc |
35935965 |
T |
|
| Q |
331 |
ataacacacaaa |
342 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
35935966 |
ataacaaacaaa |
35935977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 28 - 342
Target Start/End: Complemental strand, 21711167 - 21710856
Alignment:
| Q |
28 |
ggaatcatacctgtctagtgaaaatcaatctactactcaagatgttcgaccagaacatcttggtttaactggttcaggatcaggtggcagatatgtgtct |
127 |
Q |
| |
|
|||| |||| |||||| ||||||||| |||| | ||| ||||||||||| ||||| |||||||| ||||||||||||||||||||| | | ||||| |
|
|
| T |
21711167 |
ggaaccatatctgtctggtgaaaatctatctggtgctcgagatgttcgactagaacgtcttggttcgactggttcaggatcaggtggcggctcagtgtcg |
21711068 |
T |
|
| Q |
128 |
agaggggcagtgggaacctgttttatgcgttgtctgacatatataaattctggcttgtaacattctatagattaaagcataatagaaaaattaatttgga |
227 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||| ||| |
|
|
| T |
21711067 |
ggaggggcagtgggaatctgttttatgcattttctgacatatgtaaattctggcttgtaacgttctatagattgaggcataatagaaaaattg----gga |
21710972 |
T |
|
| Q |
228 |
agaatagcaatatcatttatgtcagaa-aaataaaatgaaacatgaattgactaccaaaaaatgtaacattcttcgaaacttgaaagcgatgattagaaa |
326 |
Q |
| |
|
||||||| |||||||||||||||| | ||||| |||||| |||||||||| || |||||||||||||||| |||||||| | |||| ||||||||| | |
|
|
| T |
21710971 |
agaatagttatatcatttatgtcaggagaaatagaatgaagcatgaattgattataaaaaaatgtaacattcctcgaaactcggaagctatgattagaga |
21710872 |
T |
|
| Q |
327 |
catcataacacacaaa |
342 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
21710871 |
catcataacaaacaaa |
21710856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 40575829 - 40575638
Alignment:
| Q |
28 |
ggaatcatacctgtctagtgaaaatcaatctactactcaagatgttcgaccagaacatcttggtttaactggttcaggatcaggtggcagatatgtgtct |
127 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| | ||| ||||||||||| ||||| | |||||| ||||||||||||||||||||| | | ||||| |
|
|
| T |
40575829 |
ggaatcatacctgtctggtgaaaatctatctggtgctcgagatgttcgactagaacgttttggttcgactggttcaggatcaggtggcggctcagtgtcg |
40575730 |
T |
|
| Q |
128 |
agaggggcagtgggaacctgttttatgcgttgtctgacatatataaattctggcttgtaacattctatagattaaagcataatagaaaaatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||| ||||||| | |||||||||||||||| |
|
|
| T |
40575729 |
ggaggggcagtgggaacctgttttatgcgttttctgacatatgtaaatcctggcttgtaacgttcaatagattgaggcataatagaaaaatt |
40575638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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