View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_27 (Length: 341)
Name: NF14040_low_27
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 50016894 - 50016705
Alignment:
| Q |
12 |
atcatcatcccaaacaacatcattataaagagcattattaaaagcttcacccatgaaatccatatcccacccggggaaccaagttgaaccccatgacatt |
111 |
Q |
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| T |
50016894 |
atcatcttcccaaacaacatcattataaagagcattattaaaagcttcacccatgaaatccatatcccacccggggaaccaagttgaaccccatgacatt |
50016795 |
T |
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| Q |
112 |
tgttcatccacaacacctcccaaccatggcatatattcctcccaattccaattcacaccctcccttattgttgttgtaccctcacttatg |
201 |
Q |
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| T |
50016794 |
tgttcatccacaacacctcccaaccatggcatatattcctcccaattccaattcacaccctcccttattgttgttgtaccctcacttatg |
50016705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 50016637 - 50016581
Alignment:
| Q |
269 |
ccattgctactacatcttcaacattgggaagattcttggggttgttaacaccattta |
325 |
Q |
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| T |
50016637 |
ccattgctactacatcttcaacattgggaagattcttggggttgttaacaccattta |
50016581 |
T |
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