View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_28 (Length: 331)
Name: NF14040_low_28
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 162 - 320
Target Start/End: Complemental strand, 8814658 - 8814500
Alignment:
| Q |
162 |
ttgtgcaggttcaaagttagatgctagtgcaaggcttgattctaagactttcactttgtgttgttgttgtatcttcttagcttccagtggtgttctgttt |
261 |
Q |
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| T |
8814658 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaagactttcactttgtgttggtgttgtatcttcttagcttctagtggtgttctggtt |
8814559 |
T |
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| Q |
262 |
tgttgttctttatttcaattttctgtttaggatgtggtactgtgttgggtctgtgctgc |
320 |
Q |
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| T |
8814558 |
tgttgttctttaattcaattttctgtttaggatgtggtactgtgctgggtctttgctgc |
8814500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 8649802 - 8649677
Alignment:
| Q |
20 |
aaagagccacttgattgttgtttgtatgtgagctgggtttcctacctgatatcaattttgcaggtttctcgaagagttgtggagtgtaatctttatggtg |
119 |
Q |
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| T |
8649802 |
aaagagccacttgattgttgtttgtatgtgagctgggtttcctgcctggtatcaattttgcaggtttctcaaagagttgtggagtgcaatctttatggtg |
8649703 |
T |
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| Q |
120 |
aaggctgcttttttaaaagagaagtg |
145 |
Q |
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| T |
8649702 |
aaggctgcttttttaaaagagaagtg |
8649677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 21964443 - 21964598
Alignment:
| Q |
145 |
gtggaatccaaccttgattgtgcaggttcaaagttagatgctagtgcaaggcttgattctaagactttcactttgtgttgttgttgtatcttcttagctt |
244 |
Q |
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| T |
21964443 |
gtggaatccaagcttgattgtgcaggttcagagttagatgctagtccatggcttgattctaagactttcactttgtgttggtgttgtatctccttagctt |
21964542 |
T |
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| Q |
245 |
ccagtggtgttctgttttgttgttcttta-tttcaattttctgtttaggatgtggtactgt |
304 |
Q |
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| T |
21964543 |
ccaatcg-----tgttttgttgttctttattttgagttttctgtttagcatgtggtactgt |
21964598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11606999 - 11606915
Alignment:
| Q |
1 |
tttctagtggttttgtttaaaagagccacttgattgttgtttgtatgtgagctgggtttcctacctgatatcaattttgcaggtt |
85 |
Q |
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| T |
11606999 |
tttctagtggttttgtttaaaagatccacttgattgttgtttgtatgtgagctgactttcctgcctaatatcaattttgcaggtt |
11606915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 23379793 - 23379904
Alignment:
| Q |
178 |
ttagatgctagtgcaaggcttgattctaagactttcactttgtgtt-gttgttgtatcttcttagcttcc----agtggtgttctgttttgttgttcttt |
272 |
Q |
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| T |
23379793 |
ttagatgctagtccatggcttgatgctaagaatgtc-ctttgtgtttggtgttgtctctccttagcttccttccaatggtgttttgttttgttgttcttt |
23379891 |
T |
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| Q |
273 |
atttcaattttct |
285 |
Q |
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| T |
23379892 |
atttagattttct |
23379904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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