View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_29 (Length: 329)
Name: NF14040_low_29
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 285
Target Start/End: Original strand, 44382068 - 44382318
Alignment:
| Q |
30 |
taagcaattacttgtctaggtacataaatagaaagaaaaatgtgagtaaacttttacctgtaatatacatatggtaacgtgagggaaggtatgtttaaat |
129 |
Q |
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| T |
44382068 |
taagcaattacttgtctaggta----aatagaaagaaaaatgtgagtaaacttttacctgtaatatacatatggtaatgtgagtgaaggtatgttaaaat |
44382163 |
T |
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| Q |
130 |
gatcttgtaatgttatcacataggcaaatcaatgagagaggtcagtttaaagcttcaaatgttcataaatagattttnnnnnnnngtatactacccatta |
229 |
Q |
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| T |
44382164 |
gatcttgtaatgttatcacataggcaaatcaatgagagaggtcagtttaaagcttcaaatgttcataaatagatttt-aaaaaaagtatactacccatta |
44382262 |
T |
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| Q |
230 |
atcactattaaaccgactccgatcaaatttttgaaccttaaatcgttacatatatt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44382263 |
atcactattaaaccgactccgatcaaatttttgaaccttaaatcgttacatatatt |
44382318 |
T |
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