View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_3 (Length: 621)
Name: NF14040_low_3
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 28 - 603
Target Start/End: Complemental strand, 51532754 - 51532179
Alignment:
| Q |
28 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
127 |
Q |
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| T |
51532754 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
51532655 |
T |
|
| Q |
128 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaatatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
227 |
Q |
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| T |
51532654 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaaaatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
51532555 |
T |
|
| Q |
228 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccacttgtttaatcactaaatacagtattatactgagacata |
327 |
Q |
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| T |
51532554 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattcccacttgtttaatcactaaatacagtattatactgagacata |
51532455 |
T |
|
| Q |
328 |
catggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaagatcccccagaataaattgagctacag |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51532454 |
catggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaagatcccccaaaataaattgagctacag |
51532355 |
T |
|
| Q |
428 |
taaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccccagcacccggtccggagttcctgtattcact |
527 |
Q |
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| T |
51532354 |
taaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccccagcacccggtccggagttcatgtattcact |
51532255 |
T |
|
| Q |
528 |
gtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttactcatatag |
603 |
Q |
| |
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| T |
51532254 |
gtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttactcatatag |
51532179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 207 - 599
Target Start/End: Complemental strand, 51526837 - 51526436
Alignment:
| Q |
207 |
tggggttaataataacccgtctccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccac---ttgtttaatcacta |
303 |
Q |
| |
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||||||||| | |||||||| ||| |||| ||||||||| |||||||||||||||||||||||||| ||| |||||| | || | ||||||||||| |
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| T |
51526837 |
tggggttaacagtaacccgtgtcc-ttttgcttttacatactttttctttgatacaataccaagaaccgttgtgaattacaacaactcttttaatcacta |
51526739 |
T |
|
| Q |
304 |
aatacagtattatactgagacatacatggtttta-------agttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaac |
396 |
Q |
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|||||| ||||||| | ||||||||||| || | |||||||||||||||||||| ||||||| | |||||||||||| || | |||||||||| |
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| T |
51526738 |
aatacaatattatatttagacatacatgaattaatttgtcaagttaaatttactttacactttcaaaccagaagtgtaagttacaccggtggaaggtaac |
51526639 |
T |
|
| Q |
397 |
caaagatcccccagaataaattgagctacagtaaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccc |
496 |
Q |
| |
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||||||| |||| |||||||||||| ||||| || || |||||| ||||||||||||| ||||||||| || |||||||||||||| || ||||||| |
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| T |
51526638 |
caaagattcccctcaataaattgagccacagtgaatttagtagcctcactcgaatcattcaatacatggtatcctgaccatttcacccggttagctaccc |
51526539 |
T |
|
| Q |
497 |
cagcacccggtccggagttcctgtattcactgtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttact |
596 |
Q |
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| ||||||||||| |||||| |||||||| |||||||||||| | |||| ||| | | || || |||||| ||||||||| || ||||| |||| ||| |
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| T |
51526538 |
cggcacccggtccagagttcatgtattcagcgtagtacaatgtgttcaaagcaaaattaccgttccactctaaccacccttctggccttattgcgtcact |
51526439 |
T |
|
| Q |
597 |
cat |
599 |
Q |
| |
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||| |
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|
| T |
51526438 |
cat |
51526436 |
T |
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