View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14040_low_4 (Length: 611)
Name: NF14040_low_4
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 2220263 - 2220600
Alignment:
| Q |
19 |
gatctgcctccctcaaccgtgaaagatacgataatacaaagtttaaacaaattgttttcatcacctccgcattgcaaacttttgttaggaaaataaaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
2220263 |
gatctgcctccctcaaccgtgaaagatacgataatacaaagtttaaacaaattgttttcatcacctccgcgttgcaaacttttgttaggaaaataaa-ta |
2220361 |
T |
|
| Q |
119 |
ttaacattatcaaaattaacaatggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagctgtgaatatgaattatatctgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2220362 |
ttaacattatcaaaattaacaatggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagctgtgaatatgaattatatctgtt |
2220461 |
T |
|
| Q |
219 |
tgttttaatgtttataattgattagttagacactcctcactctttcttgttagttaattcttttgaaagaagttctaaatctcaccattcatatataatg |
318 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2220462 |
tgttttaatgtttataattgattagttggacactccttactctttcttgttagttaattcttttgaaagcagttctaaatctcaccattcatatataatg |
2220561 |
T |
|
| Q |
319 |
gcagtgcagtgatgatttttctcacattactcatttgtg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2220562 |
gcagtgcagtgatgatttttctcacattactcatttgtg |
2220600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 2207254 - 2207522
Alignment:
| Q |
19 |
gatctgcctccctcaaccgtgaaagatacgataatacaaagtttaaacaaattgttttcatcacctcc-gca-------ttgcaaacttttgttaggaaa |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2207254 |
gatctgcctcactcaaccgtgaaagatacgataatacaaagtttaaacaaattgttttcttcacctctagcaatattcgttgcaaacttttgttaggaaa |
2207353 |
T |
|
| Q |
111 |
ataaaatattaa------cattatcaaaattaacaatggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagctgtgaatat |
204 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
2207354 |
ataaaatattattccattccttatcaaaattaacagtggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagcagtgaatgt |
2207453 |
T |
|
| Q |
205 |
gaattatatctgtttgttttaatgtttataattgattagttagacactcctcactctttcttgttagtt |
273 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
2207454 |
gaattataactgtttgttttaatgtttataattgattggttggacactccttactctttcttgttagtt |
2207522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 415 - 609
Target Start/End: Original strand, 2220903 - 2221086
Alignment:
| Q |
415 |
ctatccactttatagctcgaagaagactccaattaagcctctccttccttccattccattccatgtgtttcatattctatattcgctactgagttgcagc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2220903 |
ctatccactttatagctcgaagaagactccaattaagcctctccttccttcc-----attccatgtgtttcatattctatattcgctactcagttgcagc |
2220997 |
T |
|
| Q |
515 |
taccaacacttgtcatacataggcatgaagaaatcaattcaaattcaaacacaaccaacgtcatcaaaatctgatccatcaaggtttcatctcac |
609 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
2220998 |
taccaacacttgtcattaataggcatgaagaaatc------aattcaaacacaaccaacgtcatcaaaatctgctccatcaaggtttcatttcac |
2221086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 2207623 - 2207682
Alignment:
| Q |
320 |
cagtgcagtgatgatttttctcacattactcatttgtgggttttactcttttgtgttaac |
379 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
2207623 |
cagtgcagtgataatttttctcatgttactcatttgtgggattttctcttttgtggtaac |
2207682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University