View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14040_low_41 (Length: 243)
Name: NF14040_low_41
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 1857310 - 1857520
Alignment:
| Q |
14 |
agaagaagtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
113 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1857310 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1857409 |
T |
|
| Q |
114 |
tcaaggaggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
213 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1857410 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
1857509 |
T |
|
| Q |
214 |
aatggataagc |
224 |
Q |
| |
|
|||| |||||| |
|
|
| T |
1857510 |
aatgaataagc |
1857520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 1815738 - 1815524
Alignment:
| Q |
10 |
agagagaagaagtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1815738 |
agagagaagaagtcttgctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1815639 |
T |
|
| Q |
110 |
gagatcaaggaggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
209 |
Q |
| |
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| ||||| |||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1815638 |
gtgatcatggaggtggctgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
1815539 |
T |
|
| Q |
210 |
ggttaatggataagc |
224 |
Q |
| |
|
||||||||||||||| |
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|
| T |
1815538 |
ggttaatggataagc |
1815524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 1843295 - 1843509
Alignment:
| Q |
10 |
agagagaagaagtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
109 |
Q |
| |
|
|||||||||||||||||| ||| | || || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1843295 |
agagagaagaagtcttgcaatgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1843394 |
T |
|
| Q |
110 |
gagatcaaggaggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
209 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1843395 |
gagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
1843494 |
T |
|
| Q |
210 |
ggttaatggataagc |
224 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
1843495 |
ggttaatgaataagc |
1843509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 1868908 - 1869118
Alignment:
| Q |
14 |
agaagaagtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
113 |
Q |
| |
|
|||||||||||||| ||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1868908 |
agaagaagtcttgcaatgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1869007 |
T |
|
| Q |
114 |
tcaaggaggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
213 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1869008 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
1869107 |
T |
|
| Q |
214 |
aatggataagc |
224 |
Q |
| |
|
|||| |||||| |
|
|
| T |
1869108 |
aatgaataagc |
1869118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 9161550 - 9161351
Alignment:
| Q |
20 |
agtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
119 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| | |||| | ||||||| |||||||| |||| | | ||||| |||||||| | ||||| |||| |
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|
| T |
9161550 |
agtcttgctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaagg |
9161451 |
T |
|
| Q |
120 |
aggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgga |
219 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || ||||||||||| |
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|
| T |
9161450 |
aggttgctattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaaggaagtggcaatggagttggatggtataaggttaatgga |
9161351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 9170376 - 9170172
Alignment:
| Q |
20 |
agtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatgg-tttgtggaatgaagaaaacaaacaagagatcaag |
118 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| | ||||| | ||||||| |||||||| ||| |||||| || || || ||||| ||||||| ||| |
|
|
| T |
9170376 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaattttttgaagctattcaagttggatttgtg-aacgatgataacaagaaagagattaag |
9170278 |
T |
|
| Q |
119 |
gaggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgg |
218 |
Q |
| |
|
||||| ||| ||||||| ||| ||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||| || || |||||||||| |
|
|
| T |
9170277 |
gaggttgctattcttgcttcaaggtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggcaatggagttggatggcataaggttaatgg |
9170178 |
T |
|
| Q |
219 |
ataagc |
224 |
Q |
| |
|
| |||| |
|
|
| T |
9170177 |
agaagc |
9170172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 9199943 - 9199739
Alignment:
| Q |
20 |
agtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
119 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| | ||||| | ||||| | |||||||| ||| | | | |||| |||||||| ||||||| |||| |
|
|
| T |
9199943 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaagg |
9199844 |
T |
|
| Q |
120 |
aggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgga |
219 |
Q |
| |
|
|||| ||| ||||||| |||| ||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| || || ||||||||||| |
|
|
| T |
9199843 |
aggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggtataaggttaatgga |
9199744 |
T |
|
| Q |
220 |
taagc |
224 |
Q |
| |
|
|||| |
|
|
| T |
9199743 |
gaagc |
9199739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 9118902 - 9119097
Alignment:
| Q |
20 |
agtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
119 |
Q |
| |
|
||||||||||||||||| ||||||| || ||| | ||||| | ||||||| |||||||| ||| | | |||||| || ||||| ||||||| |||| |
|
|
| T |
9118902 |
agtcttgctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaagg |
9119001 |
T |
|
| Q |
120 |
aggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaa |
215 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||| |||| || |||||||| || ||||||||| | |||||||| ||||| || || ||||||| |
|
|
| T |
9119002 |
aggttgctattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaaggaaatagctatggagttggatggtataaggttaa |
9119097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 9218459 - 9218255
Alignment:
| Q |
20 |
agtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
119 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| | ||||| | ||||| | |||||||| ||| | | ||||| |||||||| ||||||| |||| |
|
|
| T |
9218459 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttcaatgatgaaaacaagaaagagattaagg |
9218360 |
T |
|
| Q |
120 |
aggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgga |
219 |
Q |
| |
|
|||| || ||||||| |||| ||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| || || ||||||||||| |
|
|
| T |
9218359 |
aggtttctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggcataaggttaatgga |
9218260 |
T |
|
| Q |
220 |
taagc |
224 |
Q |
| |
|
|||| |
|
|
| T |
9218259 |
gaagc |
9218255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 9229304 - 9229140
Alignment:
| Q |
60 |
atgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctgttcttgcagcaaactgtttgagacttagagg |
159 |
Q |
| |
|
|||||| ||||||| |||||| |||| | | |||||| || ||||| | ||||| ||||| || ||| ||||||| |||| || |||||||||| ||| |
|
|
| T |
9229304 |
atgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctattcttgctgcaaggtgcttgagacttaaagg |
9229205 |
T |
|
| Q |
160 |
ggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatggataagc |
224 |
Q |
| |
|
|| |||||||| |||||||| |||||||||||||| | ||||| | ||||||||||| |||| |
|
|
| T |
9229204 |
cgaggaaagacctagcatgaaagaagtggctatggagctagaggggttaaggttaatggagaagc |
9229140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 9155638 - 9155439
Alignment:
| Q |
20 |
agtcttgctatgcactttctgtcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
119 |
Q |
| |
|
|||||||| ||||||||| ||||||| || ||| | |||| | ||||||| |||||||| |||| | | ||||| |||||||| | ||||| || | |
|
|
| T |
9155638 |
agtcttgcaatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtatcttaaatgatgaaaacaaggaggagattaaag |
9155539 |
T |
|
| Q |
120 |
aggtggctgttcttgcagcaaactgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgga |
219 |
Q |
| |
|
|||| ||| |||| |||||| ||||| ||||| |||| || |||||||| || ||||||||| | |||||||| ||||| || || ||||||||||| |
|
|
| T |
9155538 |
aggttgctattctggcagcacggtgtttacgacttcgaggtgaggaaagacctagtatgaaggaaatagctatggagttggatggtataaggttaatgga |
9155439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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