View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_42 (Length: 240)
Name: NF14040_low_42
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 1038946 - 1039145
Alignment:
| Q |
10 |
ataatactaattttaccannnnnnnnaactaacaaaaatgagatatattaccacaaagagagagctctactctctagcat-aagacttgcaaa-gaagag |
107 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| |
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| T |
1038946 |
ataatactaattttaccattttttttaactaacaaaaatgagatatattaccacaaagggagagctctactctctagcaacaagacttgcaaaagaagag |
1039045 |
T |
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| Q |
108 |
caactaattattttctttgcgaaccagcacaatccaaaaagaccggggagtattttcaatattaaaagtagtgaaaggaaaaaacttattctccaagaaa |
207 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1039046 |
caactaattattt-ctttgcgaaccagcacaatccaaagagaccggagagtattttcaatattaaaagtagtgaaaggaaaaaacttattctccaagaaa |
1039144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 20248961 - 20248894
Alignment:
| Q |
43 |
aaaaatgagatatattaccacaaagagagagctctactctctagcataagacttgcaaagaagagcaa |
110 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
20248961 |
aaaaatgagatatatcaccacaaagtgagagctctactctctagcacaaggcgtgcaaagaagagcaa |
20248894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 42674801 - 42674843
Alignment:
| Q |
40 |
aacaaaaatgagatatattaccacaaagagagagctctactct |
82 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
42674801 |
aacaaaaatgagatacattaccacaaagggagagctctactct |
42674843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 14550912 - 14550982
Alignment:
| Q |
40 |
aacaaaaatgagatatattaccacaaagagagagctctactctctagcataagacttgcaaagaagagcaa |
110 |
Q |
| |
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||||||||||||||||||||||| |||| ||| |||||||||| ||||| |||| ||||||||||||||| |
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| T |
14550912 |
aacaaaaatgagatatattaccataaagggagggctctactctttagcacaagatgtgcaaagaagagcaa |
14550982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 40526209 - 40526139
Alignment:
| Q |
40 |
aacaaaaatgagatatattaccacaaagagagagctctactctctagcataagacttgcaaagaagagcaa |
110 |
Q |
| |
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||||||| | |||||||||| || |||| |||||||||||||||||||| ||| ||||||||||||||| |
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| T |
40526209 |
aacaaaactaagatatattatcaaaaagggagagctctactctctagcacaaggtgtgcaaagaagagcaa |
40526139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 29246398 - 29246356
Alignment:
| Q |
40 |
aacaaaaatgagatatattaccacaaagagagagctctactct |
82 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
29246398 |
aacaaaaatgagatatattatcacaaagagagagttttactct |
29246356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 30819091 - 30819136
Alignment:
| Q |
40 |
aacaaaaatgagatatattaccacaaagagagagctctactctcta |
85 |
Q |
| |
|
|||||||||||||||||||| |||||||| | || ||||||||||| |
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|
| T |
30819091 |
aacaaaaatgagatatattatcacaaagaaaaagatctactctcta |
30819136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 29000153 - 29000205
Alignment:
| Q |
40 |
aacaaaaatgagatatattaccacaaagagagagctctactctctagcataag |
92 |
Q |
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|||||||||||||||||||||| |||||| | || |||||||||||||||| |
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| T |
29000153 |
aacaaaaatgagatatattacctcaaagaaaaagaagtactctctagcataag |
29000205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 22816390 - 22816438
Alignment:
| Q |
40 |
aacaaaaatgagatatattaccacaaagagagagctctactctctagca |
88 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
22816390 |
aacaaaaatgagatataataccattaaggaagagctctactctctagca |
22816438 |
T |
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