View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14040_low_5 (Length: 610)

Name: NF14040_low_5
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14040_low_5
NF14040_low_5
[»] chr1 (21 HSPs)
chr1 (6-514)||(33987702-33988208)
chr1 (366-610)||(14669582-14669827)
chr1 (366-610)||(14706077-14706322)
chr1 (366-584)||(14708567-14708786)
chr1 (366-602)||(14654222-14654458)
chr1 (366-602)||(14664013-14664249)
chr1 (370-610)||(14683743-14683984)
chr1 (366-585)||(14716280-14716500)
chr1 (377-602)||(14652525-14652752)
chr1 (377-602)||(14662316-14662543)
chr1 (370-571)||(14681592-14681794)
chr1 (367-571)||(14674471-14674676)
chr1 (367-602)||(14679849-14680085)
chr1 (370-593)||(38175420-38175644)
chr1 (368-585)||(28366097-28366315)
chr1 (374-593)||(14667007-14667221)
chr1 (370-472)||(14676625-14676727)
chr1 (380-494)||(11872471-11872585)
chr1 (383-455)||(37422175-37422247)
chr1 (373-449)||(28698549-28698625)
chr1 (431-490)||(14703134-14703193)
[»] chr2 (34 HSPs)
chr2 (6-594)||(9020494-9021065)
chr2 (9-593)||(9026427-9027003)
chr2 (10-489)||(8988089-8988568)
chr2 (22-450)||(9031707-9032126)
chr2 (366-610)||(30731997-30732242)
chr2 (116-491)||(9016238-9016611)
chr2 (374-593)||(30733985-30734205)
chr2 (261-594)||(8973195-8973530)
chr2 (371-577)||(32918074-32918281)
chr2 (252-491)||(9030274-9030512)
chr2 (248-490)||(8992018-8992262)
chr2 (108-357)||(8996098-8996339)
chr2 (248-458)||(9023319-9023528)
chr2 (273-444)||(8984588-8984760)
chr2 (370-577)||(43850042-43850250)
chr2 (302-491)||(2841010-2841201)
chr2 (80-245)||(9023133-9023294)
chr2 (293-444)||(8979237-8979389)
chr2 (84-213)||(8991882-8992013)
chr2 (83-213)||(8973044-8973176)
chr2 (374-593)||(9008018-9008238)
chr2 (379-524)||(19232359-19232504)
chr2 (127-406)||(8975440-8975724)
chr2 (384-484)||(10763878-10763978)
chr2 (266-322)||(9007956-9008012)
chr2 (118-213)||(9030166-9030262)
chr2 (379-484)||(6471709-6471813)
chr2 (405-488)||(17225659-17225743)
chr2 (381-491)||(35701893-35702003)
chr2 (18-80)||(8996030-8996092)
chr2 (408-491)||(17275862-17275945)
chr2 (432-514)||(8912989-8913074)
chr2 (537-593)||(8992294-8992349)
chr2 (380-415)||(39814115-39814150)
[»] chr4 (17 HSPs)
chr4 (302-578)||(11652298-11652575)
chr4 (302-584)||(3461042-3461325)
chr4 (369-584)||(49106428-49106644)
chr4 (368-524)||(50077158-50077315)
chr4 (370-592)||(49108524-49108747)
chr4 (378-489)||(26998735-26998846)
chr4 (378-483)||(26984668-26984773)
chr4 (378-489)||(48205832-48205943)
chr4 (405-491)||(21503706-21503792)
chr4 (379-482)||(41013548-41013651)
chr4 (384-484)||(26982549-26982646)
chr4 (413-486)||(35806165-35806238)
chr4 (373-477)||(49533638-49533735)
chr4 (441-484)||(54677590-54677633)
chr4 (434-484)||(34481105-34481155)
chr4 (384-437)||(6431957-6432010)
chr4 (382-418)||(34481155-34481191)
[»] chr8 (15 HSPs)
chr8 (374-585)||(10944297-10944509)
chr8 (302-578)||(41841058-41841335)
chr8 (377-595)||(40054312-40054531)
chr8 (379-575)||(37679757-37679953)
chr8 (371-491)||(44878977-44879097)
chr8 (371-491)||(44880824-44880944)
chr8 (377-577)||(37682057-37682258)
chr8 (302-477)||(42555090-42555266)
chr8 (302-450)||(42220880-42221027)
chr8 (394-489)||(44582870-44582965)
chr8 (301-450)||(42091944-42092093)
chr8 (370-420)||(42872514-42872564)
chr8 (431-483)||(44583111-44583162)
chr8 (437-491)||(42554655-42554709)
chr8 (528-593)||(42872408-42872471)
[»] chr5 (8 HSPs)
chr5 (370-593)||(7524961-7525185)
chr5 (302-491)||(1716444-1716634)
chr5 (336-580)||(3643599-3643843)
chr5 (381-489)||(4103249-4103357)
chr5 (410-514)||(5350672-5350777)
chr5 (379-486)||(16037861-16037966)
chr5 (384-448)||(19261152-19261216)
chr5 (431-491)||(13636366-13636426)
[»] chr6 (8 HSPs)
chr6 (368-533)||(10795840-10796006)
chr6 (368-592)||(10791543-10791768)
chr6 (377-574)||(30521242-30521440)
chr6 (431-574)||(13136608-13136752)
chr6 (379-489)||(8875691-8875803)
chr6 (420-491)||(11333273-11333344)
chr6 (503-576)||(10509478-10509551)
chr6 (384-483)||(21216032-21216131)
[»] chr7 (2 HSPs)
chr7 (377-491)||(27134511-27134625)
chr7 (383-491)||(8128149-8128256)
[»] chr3 (1 HSPs)
chr3 (379-425)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (431-488)||(5450-5507)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 514
Target Start/End: Original strand, 33987702 - 33988208
Alignment:
Q  6 attctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagc 105  Q
    ||||||||||| || |||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  33987702 attctaacagacacgcacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagccttacccggttagtccatcaacaaaagc 33987800  T
Q  106 aagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatct 205  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||    
T  33987801 aagggataagataagaatcagatcatgatattttgctgtaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatct 33987900  T
Q  206 actctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaa-gctatttcaaaaaagt 304  Q
    |||||    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || ||||||||||||    
T  33987901 actct----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaacatgcaaccctgtttcaaaaaagt 33987996  T
Q  305 cccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaa 403  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  33987997 cccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggctaa 33988096  T
Q  404 gatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccactta 502  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  |||||  ||||||||||||||||||||||||| |||||| ||||||| ||     
T  33988097 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaattacttttttaagggggagaggccatttc 33988196  T
Q  503 agtagcttgcta 514  Q
    | ||||||||||    
T  33988197 aatagcttgcta 33988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 366 - 610
Target Start/End: Complemental strand, 14669827 - 14669582
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14669827 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14669728  T
Q  466 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 564  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||  | |||||||||||| |||||||||||||||||||||||||||||     
T  14669727 gatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgtcgccaatgtgttgcactatagcattggtctggt 14669628  T
Q  565 gcaccccaccaattcaagtttaaatttttattctggttcatctctg 610  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  14669627 gcaccccaccaattcaagtttaaatttttattctggttcatatctg 14669582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 366 - 610
Target Start/End: Original strand, 14706077 - 14706322
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14706077 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14706176  T
Q  466 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 564  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||  | |||||||||| | | ||||||||||||||| ||||||||||||    
T  14706177 gatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgttgactatgtgttgcactataacattggtctggc 14706276  T
Q  565 gcaccccaccaattcaagtttaaatttttattctggttcatctctg 610  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  14706277 gcaccccaccaattcaagtttaaatttttattctggttcatatctg 14706322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 366 - 584
Target Start/End: Original strand, 14708567 - 14708786
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14708567 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14708666  T
Q  466 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 564  Q
    |||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||||| |||||||| |||||    
T  14708667 gatattaaattacttttttgagggggagaggtcactttagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctggc 14708766  T
Q  565 gcaccccaccaattcaagtt 584  Q
    ||||||||||||||||||||    
T  14708767 gcaccccaccaattcaagtt 14708786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 366 - 602
Target Start/End: Complemental strand, 14654458 - 14654222
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14654458 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14654359  T
Q  466 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 564  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  ||||    
T  14654358 gatattaaattacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggc 14654259  T
Q  565 gcaccccaccaattcaagtttaaatttttattctggtt 602  Q
     ||||||||||||||||| |||||||||||||||||||    
T  14654258 tcaccccaccaattcaag-ttaaatttttattctggtt 14654222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 366 - 602
Target Start/End: Complemental strand, 14664249 - 14664013
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14664249 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacac 14664150  T
Q  466 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 564  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  ||||    
T  14664149 gatattaaattacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggc 14664050  T
Q  565 gcaccccaccaattcaagtttaaatttttattctggtt 602  Q
     ||||||||||||||||| |||||||||||||||||||    
T  14664049 tcaccccaccaattcaag-ttaaatttttattctggtt 14664013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 370 - 610
Target Start/End: Original strand, 14683743 - 14683984
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14683842  T
Q  470 ttaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcac 568  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||||||| | ||| |||||||  ||||||||||||||||||||||||  ||| ||||    
T  14683843 ttaaattacttttttgagggggagaggcaactttagtagcttgctactagtcctctcgtgtgtcaccaatgtgttgcactatagcattggcttggtgcac 14683942  T
Q  569 cccaccaattcaagtttaaatttttattctggttcatctctg 610  Q
    ||||||||| |||  |||||||||||||||||||||| ||||    
T  14683943 cccaccaatccaaagttaaatttttattctggttcatatctg 14683984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 366 - 585
Target Start/End: Original strand, 14716280 - 14716500
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14716280 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacac 14716379  T
Q  466 gatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 564  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||  | ||| |||||||| ||||||||||||||||||||||||  |||     
T  14716380 gatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattggcttggt 14716479  T
Q  565 gcaccccaccaattcaagttt 585  Q
    |||||||||||||||||||||    
T  14716480 gcaccccaccaattcaagttt 14716500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 377 - 602
Target Start/End: Original strand, 14652525 - 14652752
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T
Q  477 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 575  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  |||||||||||||||    
T  14652625 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14652724  T
Q  576 attcaagtttaaat-ttttattctggtt 602  Q
    ||||||||| |||| ||||||| |||||    
T  14652725 attcaagttcaaatattttattttggtt 14652752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 377 - 602
Target Start/End: Original strand, 14662316 - 14662543
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T
Q  477 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 575  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  |||||||||||||||    
T  14662416 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14662515  T
Q  576 attcaagtttaaat-ttttattctggtt 602  Q
    ||||||||| |||| ||||||| |||||    
T  14662516 attcaagttcaaatattttattttggtt 14662543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 370 - 571
Target Start/End: Original strand, 14681592 - 14681794
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 469  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14681691  T
Q  470 ttaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcac 568  Q
    |||||||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| |||| |||    
T  14681692 ttaaattacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacac 14681791  T
Q  569 ccc 571  Q
    |||    
T  14681792 ccc 14681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 367 - 571
Target Start/End: Original strand, 14674471 - 14674676
Alignment:
Q  367 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacg 466  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  14674471 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14674570  T
Q  467 atattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcg 565  Q
    ||||||||||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| ||||     
T  14674571 atattaaattacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggca 14674670  T
Q  566 cacccc 571  Q
    ||||||    
T  14674671 cacccc 14674676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 367 - 602
Target Start/End: Original strand, 14679849 - 14680085
Alignment:
Q  367 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacg 466  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  14679849 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14679948  T
Q  467 atattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcg 565  Q
    ||||||||||||||||||||||||| || ||||  | |||||||||||||||||||||||| |||| | ||||| ||||||||| ||||||||  |||||    
T  14679949 atattaaattacttttttgagggggagaagccatattagtagcttgctactaggcttcttgagtgttgccaatgcgttgcactacagcattggcttggcg 14680048  T
Q  566 caccccaccaattcaagtttaaatttttattctggtt 602  Q
    ||||| ||||||   ||| ||||||||| || |||||    
T  14680049 cacccgaccaatctgagtctaaattttttttttggtt 14680085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 370 - 593
Target Start/End: Complemental strand, 38175644 - 38175420
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgata 38175545  T
Q  470 ttaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcac 568  Q
    |||||||||||||||||||||| ||  |||| | ||||||||||| || || || |  |||||||   ||||||||||||||  |||  | |||||||||    
T  38175544 ttaaattacttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgcac 38175445  T
Q  569 cccaccaattcaagtttaaattttt 593  Q
    ||||||||||| |||| || |||||    
T  38175444 cccaccaattctagttcaatttttt 38175420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 368 - 585
Target Start/End: Complemental strand, 28366315 - 28366097
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtg-gaccaatggttcacacg 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||| |||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacg 28366216  T
Q  467 atattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcg 565  Q
    |||||||||||||||||| |||||| ||| | | |  |||||||||||||||||  | |  ||||||||  ||| |||||||||| ||||||| ||||||    
T  28366215 atattaaattacttttttaagggggagagactattatagtagcttgctactaggtctttcatgtgtcgtttatgcgttgcactattgcattgg-ctggcg 28366117  T
Q  566 caccccaccaattcaagttt 585  Q
    || |||||||||| ||||||    
T  28366116 catcccaccaattaaagttt 28366097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 374 - 593
Target Start/End: Complemental strand, 14667221 - 14667007
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaa 14667122  T
Q  474 attacttttttgaggggg-gaggcca-cttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 571  Q
    ||||||||||  |||||| || ||||  || |||||       | |||||||| | |||| | || |||||||||||||||||||||  |||||||||||    
T  14667121 attactttttctagggggagaagccatttttagtag-------caaggcttctcgagtgttgccagtgtgttgcactatagcattggcttggcgcacccc 14667029  T
Q  572 accaattcaagtttaaattttt 593  Q
    |||||| |||| | ||||||||    
T  14667028 accaatccaagctcaaattttt 14667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 14676625 - 14676727
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14676724  T
Q  470 tta 472  Q
    |||    
T  14676725 tta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 380 - 494
Target Start/End: Complemental strand, 11872585 - 11872471
Alignment:
Q  380 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattact 479  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||  |||||| ||||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  480 tttttgaggggggag 494  Q
    ||||| | |||||||    
T  11872485 ttttttaagggggag 11872471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  383 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaa 455  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 28698549 - 28698625
Alignment:
Q  373 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtg 449  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||  |||||||| |||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 14703134 - 14703193
Alignment:
Q  431 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg 490  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||  ||||| |||||    
T  14703134 gtttaatatttgatatgtggaccaatagtccacacgatattaaattaaattttttagggg 14703193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 594
Target Start/End: Original strand, 9020494 - 9021065
Alignment:
Q  6 attctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagc 105  Q
    ||||||||| | |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  9020494 attctaacaaacacacacaatagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatacccttagccggttagcccatcaacaaaagc 9020593  T
Q  106 aagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatct 205  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  9020594 aaggaataagataagaatccgatcatgatattttgctttaagacgagaatatcaatttaatttttggcaattcaccatg-tggccaatgtgtatgtatct 9020692  T
Q  206 actctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtc 305  Q
    ||| ||||    |||||| ||||| ||||||||||||||||||||||||||| |||||              ||||||||||||||||||||||||||||    
T  9020693 actttgat----tgatgataatgttttaagaataaagaaaacaaaggaggaaaaaagt--------------ttaccaagcaagctatttcaaaaaagtc 9020774  T
Q  306 ccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaag 404  Q
    | |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||    
T  9020775 ctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaag 9020874  T
Q  405 atcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgaggg-gggaggccactta 502  Q
    |||||||||||||||||||||||||  |||||||||||| |||||| ||||||| |||| ||  |||||||||||||||||||||| | ||||||| ||     
T  9020875 atcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttgagggtgagaggccatttc 9020974  T
Q  503 agtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttta 594  Q
    | || ||||||| | |||||||   |||||  | |||||||||||||| |||| ||| ||| |||||||||||||||||||| |||||||||    
T  9020975 aataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggt-tggtgcaccccaccaattcaagttcaaattttta 9021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 9 - 593
Target Start/End: Original strand, 9026427 - 9027003
Alignment:
Q  9 ctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaag 108  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  9026427 ctaacagacacacacaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaag 9026526  T
Q  109 ggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatct--a 206  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| |  |    
T  9026527 ggataagaaaagaataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtattttta 9026626  T
Q  207 ctctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcc 306  Q
    |||||||    |||||| ||||| ||||||||||||||| ||||| |     ||||    ||||||| ||| ||||||||||||| ||||||||||||||    
T  9026627 ctctgat----tgatgataatgttttaagaataaagaaatcaaagaa-----aaagg---aggaagaaagtctaccaagcaagctgtttcaaaaaagtcc 9026714  T
Q  307 cacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaaga 405  Q
    || |||||||||||| |||||||||||| |||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  9026715 catatcggttgttcaagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaaga 9026814  T
Q  406 tcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgag-gggggaggccacttaa 503  Q
    |||||||||||||||||||||||| ||||||||||||||  |||| ||||||| |||| ||  |||||||||||||||||||| ||| ||| ||| || |    
T  9026815 tcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagtgggagagaccatttca 9026914  T
Q  504 gtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 593  Q
     |||||||||| | || ||||   |||||| | |||  ||||||||| ||||||| ||||| |||||| |||||||||||| ||||||||    
T  9026915 atagcttgctattgggtttctcaagtgtcgcctatgctttgcactattgcattgg-ctggcacacccctccaattcaagttcaaattttt 9027003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 10 - 489
Target Start/End: Original strand, 8988089 - 8988568
Alignment:
Q  10 taacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaagg 109  Q
    ||||||| ||||||||||||||| |||||||||     |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8988089 taacagacacacacaacagtggctctcaaaaac----gaatgaacacaaagatgaaagatataatagccttagccggttagcccatcaacaaaagcaagg 8988184  T
Q  110 gataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctac-t 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  ||| |    
T  8988185 gataagataagaatcagatcatgatattttgccttaagacaagaatatcaattttatttttggcaattcatcatgatggcctatgtgtatgtacttacgt 8988284  T
Q  209 ctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtg--ttaggaagagagtttaccaagcaagctatttcaaaaaagtcc 306  Q
       || ||||||||| ||||| |||||||||| |||||||||||||||||||||||  |||||||| |||| ||||||||||| | |||||||| |||||    
T  8988285 actat-gattgatgataatgttttaagaataaggaaaacaaaggaggaagaaagtgttttaggaagtgagtctaccaagcaagttgtttcaaaatagtcc 8988383  T
Q  307 cacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaaga 405  Q
    |||||||  |||||| ||||||||||| ||||||||||||||||||| ||||||||||  |||||||||||| ||||| |||| ||||||||||| ||||    
T  8988384 cacatcgactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttttggcgaaga 8988483  T
Q  406 tcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgaggg 489  Q
    ||||||||||||| |||||||||| ||||||||| ||||  |||   ||||||||| | || |||||||||||||||||||||||    
T  8988484 tcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatattaaattacttttttgaggg 8988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 22 - 450
Target Start/End: Original strand, 9031707 - 9032126
Alignment:
Q  22 acaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagataaga 121  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  9031707 acaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaaaga 9031806  T
Q  122 atcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgta--tctactctgatagattg 219  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||  | ||||||    |||||    
T  9031807 ataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtatttttactct----gattg 9031902  T
Q  220 atgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgtt 319  Q
    |||| ||||| ||||||||||||||| |||||     | ||||    ||||||| ||| ||||||||||||| ||||||||||||| || |||| |||||    
T  9031903 atgataatgttttaagaataaagaaatcaaag-----aaaaag---gaggaagaaagtctaccaagcaagctgtttcaaaaaagtctcatatcgattgtt 9031994  T
Q  320 catgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtat 418  Q
    || ||||||||||| ||||||||| ||||||||| |||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9031995 caagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtat 9032094  T
Q  419 ctgttcttatcggtttaatatctgatatgtgg 450  Q
    ||||||||||| ||||||||||||||||||||    
T  9032095 ctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 366 - 610
Target Start/End: Original strand, 30731997 - 30732242
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  30731997 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacac 30732096  T
Q  466 gatattaaattacttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggc 564  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||     
T  30732097 gatattaaattacttttttgagggggggaggccactttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggt 30732196  T
Q  565 gcaccccaccaattcaagtttaaatttttattctggttcatctctg 610  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30732197 gcaccccaccaattcaagtttaaatttttattctggttcatatctg 30732242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 116 - 491
Target Start/End: Original strand, 9016238 - 9016611
Alignment:
Q  116 ataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatag 215  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||  ||  ||||| |||||||||||| ||||||         
T  9016238 ataagagtcagatcatgatattttgctataagacaagaatatcaatttaatttttttcaattcataatcgtggcccatgtgtatgtatttactct----a 9016333  T
Q  216 attgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggt 315  Q
    |||||||| ||||| |||||||||||| |||||||| || | ||||||||||||||||||   ||||||||| ||| ||||||| | |||||||||| ||    
T  9016334 attgatgataatgttttaagaataaag-aaacaaagtagaacgaaagtgttaggaagaga--ctaccaagcatgctgtttcaaagatgtcccacatcagt 9016430  T
Q  316 tgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgta 414  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||  ||||||| ||||||||||||  ||| |||||||||||||||||| ||||    
T  9016431 tgttcaagaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgta 9016530  T
Q  415 gtatctgttcttatc---ggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgaggggg 491  Q
    |||||||||||||||    ||||||||||||||  |||| ||||||| |||| ||  ||||||||||||||||||||||||    
T  9016531 gtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgaggggg 9016611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 374 - 593
Target Start/End: Original strand, 30733985 - 30734205
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 473  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 30734084  T
Q  474 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 572  Q
    ||||||||||| |||||| || |||| || |||||||||||||||||||||| | |||||| || || |||||||||| |||||||  ||||||||||||    
T  30734085 attactttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcacccca 30734184  T
Q  573 ccaattcaagtttaaattttt 593  Q
    ||||| |||||| ||||||||    
T  30734185 ccaatccaagttcaaattttt 30734205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 261 - 594
Target Start/End: Original strand, 8973195 - 8973530
Alignment:
Q  261 agtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataag 359  Q
    ||||||||||||||||| |||||||||| || |||||||||||| |||||||| || |||  ||||| |||||| |||||||||||||||||| ||||||    
T  8973195 agtgttaggaagagagtctaccaagcaaactgtttcaaaaaagttccacatcgattattccagaaagtaagtgaagggatgtgatatataaaagcataag 8973294  T
Q  360 cgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggt 459  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||| |||||||     
T  8973295 cgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatggg 8973394  T
Q  460 tcac-acgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattg 557  Q
    |||| || |||||||||||||||||| |||||| ||| ||| || | |||||||||  | || ||||   |||| |   ||| |||||||||| ||| ||    
T  8973395 tcacaacaatattaaattacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgcgttgcactattgca-tg 8973493  T
Q  558 gtctggcgcaccccaccaattcaagtttaaattttta 594  Q
      ||||||| ||||||||||||||||| |||||||||    
T  8973494 agctggcgcgccccaccaattcaagttcaaattttta 8973530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 371 - 577
Target Start/End: Original strand, 32918074 - 32918281
Alignment:
Q  371 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatat 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatat 32918173  T
Q  471 taaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacc 569  Q
    ||||||||||||||||||||| || |||| |  ||||||||||||||  ||||||  |||||||  |||| |||||||||||||||| || |||||||||    
T  32918174 taaattacttttttgagggggagaagccattgcagtagcttgctactctgcttctcttgtgtcgctaatgcgttgcactatagcattagtttggcgcacc 32918273  T
Q  570 ccaccaat 577  Q
     |||||||    
T  32918274 tcaccaat 32918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 252 - 491
Target Start/End: Original strand, 9030274 - 9030512
Alignment:
Q  252 gaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataa 350  Q
    |||||||||||||||||||||||  | ||||||||||||| |||||| ||||||||||||||  |||||| ||| |||||||| ||||||||||||||||    
T  9030274 gaggaagaaagtgttaggaagag--tctaccaagcaagctgtttcaagaaagtcccacatcgactgttcaagaatgcaagtgaagggatgtgatatataa 9030371  T
Q  351 aaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 450  Q
    || ||||||| ||  ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| ||| | ||||    
T  9030372 aagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtgg 9030471  T
Q  451 accaatggttcacacgatattaaattacttttttgaggggg 491  Q
      |||||| ||||||  ||||||||||||||||||||||||    
T  9030472 ctcaatgggtcacacagtattaaattacttttttgaggggg 9030512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 248 - 490
Target Start/End: Original strand, 8992018 - 8992262
Alignment:
Q  248 aaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatat 346  Q
    ||||||| |||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| |||| |||| ||||| |||||| ||||||||||||    
T  8992018 aaaggagaaagagagtgttaggaagagagtctaccaagcaaactgtttcaaaaaagtcccacattggttattcaagaaagtaagtgaagggatgtgatat 8992117  T
Q  347 ataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatat 446  Q
    |||||| ||||||||||  | ||||| ||||||| |||||||| | |||||||||||||||||||||||||| |||||||||  ||| ||||||||||      
T  8992118 ataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgatta 8992217  T
Q  447 gtggaccaatggttcac-acgatattaaattacttttttgagggg 490  Q
    |||| ||||||| |||| |  ||||||||||||||||||||||||    
T  8992218 gtggcccaatgggtcacaataatattaaattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 108 - 357
Target Start/End: Original strand, 8996098 - 8996339
Alignment:
Q  108 gggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctac 207  Q
    ||||||||||| |||||||||||| ||||||||| |       ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8996098 gggataagatacgaatcagatcataatattttgctt-------agaatattaatttaatttttggcaattcaccatgatggcctatgtttatgtatctac 8996190  T
Q  208 tctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtg--ttaggaagagagtttaccaagcaagctatttcaaaaaagtc 305  Q
    | |    ||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| | |||||||| ||||    
T  8996191 tat----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttttaggaagagagtctaccaagcaagttgtttcaaaatagtc 8996286  T
Q  306 ccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccata 357  Q
    ||||||||  |||||| |||||||| || ||||||||||||||||||| ||||    
T  8996287 ccacatcgactgttcaagaaagcaactgaagggatgtgatatataaaagcata 8996339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 248 - 458
Target Start/End: Original strand, 9023319 - 9023528
Alignment:
Q  248 aaaggaggaagaaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtgagg-gatgtgat 344  Q
    |||||||||||||||||||  ||||||||||| ||||||||||    ||  ||||||||||||||||||||||||| |||| ||||||| | ||||||||    
T  9023319 aaaggaggaagaaagtgttttaggaagagagtctaccaagcaa----ttcaaaaaaagtcccacatcggttgttcaagaaatcaagtgaagagatgtgat 9023414  T
Q  345 atataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 444  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T
Q  445 atgtggaccaatgg 458  Q
      |||| |||||||    
T  9023515 tagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 273 - 444
Target Start/End: Original strand, 8984588 - 8984760
Alignment:
Q  273 agagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctt 371  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||| ||  ||| ||    
T  8984588 agagtctaccaaacaagctatttcaaaaaagtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatt 8984687  T
Q  372 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||    
T  8984688 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 370 - 577
Target Start/End: Original strand, 43850042 - 43850250
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||  ||||| ||||    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgata 43850141  T
Q  470 ttaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcac 568  Q
    |||||| ||||||||||||||| |||| ||||| | |||||||||| | | |||||  ||||||| | ||| |||||||||| |||| ||  ||||||||    
T  43850142 ttaaatcacttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcataggcttggcgcac 43850241  T
Q  569 cccaccaat 577  Q
    || ||||||    
T  43850242 ccaaccaat 43850250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 302 - 491
Target Start/End: Complemental strand, 2841201 - 2841010
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaa-ctcatacctttctcggccttttgg 399  Q
    |||||||||||||||||| | ||||||||||||| |||||||| |||||||| || | |||||  | | ||| |  ||||||||||||||||||||||||    
T  2841201 agtcccacatcggttgttgaagaaagcaagtgagtggatgtgagatataaaagcagacgcgagcccctttttaactctcatacctttctcggccttttgg 2841102  T
Q  400 ctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 491  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  2841101 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaattacttttttgaggggg 2841010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 9023133 - 9023294
Alignment:
Q  80 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatca 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||    
T  9023133 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatactttgctttaagtcaagaatatcaatttaatttttggcaattca 9023232  T
Q  180 ccatgatggcctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaa 245  Q
     | |||||||||| |||||||||| |||| |    ||||||| | ||||| |||||||||||||||    
T  9023233 tcgtgatggcctaggtgtatgtatttactat----gattgatcataatgttttaagaataaagaaa 9023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 293 - 444
Target Start/End: Original strand, 8979237 - 8979389
Alignment:
Q  293 tttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcgg 391  Q
    ||||||||||||||||||| ||||||||| | || ||||||| ||||  |||||||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  8979237 tttcaaaaaagtcccacattggttgttcaaggaatcaagtgaagggacttgatatataaaagcataagcaagttcatctttcaactcatacctttctcgg 8979336  T
Q  392 ccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 444  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  8979337 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 8991882 - 8992013
Alignment:
Q  84 cggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcacc 181  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||| |||      
T  8991882 cggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatatcaatttaatttttgcttcaattcata 8991981  T
Q  182 atgatggcctatgtgtatgtatctactctgat 213  Q
    |||||||||||||||||||||| |||||||||    
T  8991982 atgatggcctatgtgtatgtatttactctgat 8992013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 8973044 - 8973176
Alignment:
Q  83 ccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcac 180  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||   ||| |||     
T  8973044 ccggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgcttcaagacaagaatatcaatttaatttttgcttcaattcat 8973143  T
Q  181 catgatggcctatgtgtatgtatctactctgat 213  Q
     ||| ||||||||||||| |||| |||||||||    
T  8973144 aatggtggcctatgtgtaagtatttactctgat 8973176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 374 - 593
Target Start/End: Original strand, 9008018 - 9008238
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttca-cacgatatta 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| ||||||| |||  ||  |||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  473 aattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 571  Q
    ||||||||||||||||||| ||||||| || | || |||| || | || ||||   |||||| | |||  ||||||||| ||||| | ||||| ||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgctttgcactattgcattcg-ctggcacacccc 9008216  T
Q  572 accaattcaagtttaaattttt 593  Q
    |||||||| |||| || |||||    
T  9008217 accaattctagttcaatttttt 9008238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 524
Target Start/End: Complemental strand, 19232504 - 19232359
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 478  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||  ||| ||| |||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  479 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 524  Q
     |||||||||||| || ||||||| | |||||||||| | |||||||    
T  19232405 ctttttgagggggagaagccacttcaatagcttgctattgggcttct 19232359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 127 - 406
Target Start/End: Original strand, 8975440 - 8975724
Alignment:
Q  127 atcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatagattgatgacaa 226  Q
    |||||||||||||   ||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||    |||||| ||    
T  8975440 atcatgatatttttgtttaagactagaatatcaatttaattgttggcaattcatcatgatggcctatgtgtatgtatttactctgat----tgatgataa 8975535  T
Q  227 tgtattaagaataaagaaa------acaaaggagg---aagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttg 317  Q
    ||| |||||||||| ||||      | ||| ||     |||| |  |  ||||||||||||||||||||||| | ||||||||||||||| ||||   ||    
T  8975536 tgttttaagaataacgaaatttgtaagaaaagaaatcaaagataaagg-aggaagagagtttaccaagcaagttgtttcaaaaaagtcccccatcaactg 8975634  T
Q  318 ttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagat 406  Q
    || | |||| ||||||| |||||||||||||||||| ||||||||||  || |||||||||||||  |||||  ||||||||||||||||    
T  8975635 tttaagaaatcaagtgaagggatgtgatatataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 384 - 484
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 483  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  484 t 484  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 9007956 - 9008012
Alignment:
Q  266 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007956 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 9008012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 9030166 - 9030262
Alignment:
Q  118 aagaatcagatcatgatattttgccttaagacaagaatatcaatttaa-tttttggcaaatcaccatgatggcctatgtgtatgtatctactctgat 213  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| | ||| |||||||||    
T  9030166 aagaatcagatcgtgatatttggctttaagacaagaatatcaatttaattttttgacaattcatcatgatggcctatgtgtgtctatttactctgat 9030262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 379 - 484
Target Start/End: Complemental strand, 6471813 - 6471709
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 478  Q
    |||||||| ||| ||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||  || | ||||| ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  479 tttttt 484  Q
    ||||||    
T  6471714 tttttt 6471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 17225743 - 17225659
Alignment:
Q  405 atcaagtgtagtatctgttctt-atcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 488  Q
    ||||||||||||||||||| || |||||||||||| ||||||| ||| ||||||  ||| |||||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgagg 17225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 381 - 491
Target Start/End: Original strand, 35701893 - 35702003
Alignment:
Q  381 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactt 480  Q
    |||||||||  | |||||||||||||||||||| |||| |||| ||||  ||||||||| |||||||||| ||||    |||||||||||||  ||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttactt 35701992  T
Q  481 ttttgaggggg 491  Q
    |||||||||||    
T  35701993 ttttgaggggg 35702003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 8996030 - 8996092
Alignment:
Q  18 acacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagcctt 80  Q
    ||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||| ||||    
T  8996030 acacacaactgtggcactcaaaaacaaatgaaagaacacaaagatgaaagatataataacctt 8996092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 491
Target Start/End: Original strand, 17275862 - 17275945
Alignment:
Q  408 aagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 491  Q
    |||||||||||  ||||||||| ||| ||| | | |||||||| ||||||| |||||||||||| |||||| ||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgaggggg 17275945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 8912989 - 8913074
Alignment:
Q  432 tttaatatctgatatgtggaccaatggttcacac--gatattaaattacttttttgaggggg-gaggccacttaagtagcttgcta 514  Q
    |||||||| | |||||||| ||||||  ||||||  |||||||||||||||||||||||||| ||| ||| || ||||||||||||    
T  8912989 tttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggagagaccatttcagtagcttgcta 8913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 593
Target Start/End: Original strand, 8992294 - 8992349
Alignment:
Q  537 atgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 593  Q
    |||||||||||||| |||| || |||||||||||| |||||||||||| ||||||||    
T  8992294 atgtgttgcactattgcatggg-ctggcgcacccctccaattcaagttcaaattttt 8992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  380 tacctttctcggccttttggctaagatcaagtgtag 415  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 302 - 578
Target Start/End: Complemental strand, 11652575 - 11652298
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| ||||||||||| |||| |   ||||||| |||||||||||||||||||||||||||    
T  11652575 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggc 11652476  T
Q  401 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccac 499  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| || |||||    
T  11652475 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaattatttttttgagggggagaagccac 11652376  T
Q  500 ttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaatt 578  Q
    |  | |||||||||| | ||||||||| |||||| | |||||||||||||| ||| ||| |||||||||||||||||||    
T  11652375 tccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccaccaatt 11652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 302 - 584
Target Start/End: Complemental strand, 3461325 - 3461042
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| ||||  | ||||||||||||| ||||| || ||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||    
T  3461325 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttctcggccttttggc 3461226  T
Q  401 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccac 499  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||||||||||||||||||||||||| |||||| || ||||     
T  3461225 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttaagggggagaagccat 3461126  T
Q  500 ttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtt 584  Q
    || | |||||||||| | || |||| | |||||||| ||| |||||||||| |||| || ||||| |||||||||||| ||||||    
T  3461125 ttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcatagg-ctggcacaccccaccaatacaagtt 3461042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 369 - 584
Target Start/End: Complemental strand, 49106644 - 49106428
Alignment:
Q  369 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgat 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 49106545  T
Q  469 attaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgca 567  Q
    ||||||||||||||||||||||| || | ||| | |||||||||||||| |  ||||| |||||||   |||||||||||||| ||||  |   ||||||    
T  49106544 attaaattacttttttgagggggagaagtcaccttagtagcttgctactggatttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgca 49106445  T
Q  568 ccccaccaattcaagtt 584  Q
    |||||||||||| ||||    
T  49106444 ccccaccaattctagtt 49106428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 368 - 524
Target Start/End: Complemental strand, 50077315 - 50077158
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacga 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||    
T  50077315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatga 50077216  T
Q  468 tattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 524  Q
    |||||||||||||||||||||||| || ||||||| | |||||||||| | |||||||    
T  50077215 tattaaattacttttttgagggggagaagccacttcaatagcttgctattgggcttct 50077158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 370 - 592
Target Start/End: Complemental strand, 49108747 - 49108524
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||||||||||    
T  49108747 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgata 49108648  T
Q  470 ttaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcac 568  Q
    |||||||||||||||||||||| || | ||    |||||||||||| | | |||||| |||||||   |||||||||||||| ||||  |   |||||||    
T  49108647 ttaaattacttttttgagggggagaagtcatcacagtagcttgctattggacttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgcac 49108548  T
Q  569 cccaccaattcaagtttaaatttt 592  Q
    ||||||||| | ||||||| ||||    
T  49108547 cccaccaatcctagtttaattttt 49108524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  378 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  478 cttttttgaggg 489  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 378 - 483
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  378 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  478 cttttt 483  Q
    ||||||    
T  26984673 cttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 378 - 489
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  378 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 477  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||   |||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  478 cttttttgaggg 489  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 491
Target Start/End: Original strand, 21503706 - 21503792
Alignment:
Q  405 atcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 491  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  |||| | |||||||||||||||||| |||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgaggggg 21503792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 379 - 482
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 478  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  479 tttt 482  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 484
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 483  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||   ||||| ||||| ||||||||| ||||| || ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgttatta---gtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 486
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  413 tagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 486  Q
    |||||| |||||||||| ||||||||| ||||||||   | ||||  || ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 477
Target Start/End: Complemental strand, 49533735 - 49533638
Alignment:
Q  373 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatta 472  Q
    |||| |||||||||||||||| || ||||||||||||||| | |||||||||||||     |||||||||||||||    |||| | |||||||||||||    
T  49533735 caacccatacctttctcggccctt-ggctaagatcaagtgca-tatctgttcttat-----taatatctgatatgttactcaataggtcacacgatatta 49533643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 54677590 - 54677633
Alignment:
Q  441 tgatatgtggaccaatggttcacacgatattaaattactttttt 484  Q
    |||||||||| | ||||| |||||||||||||||||||||||||    
T  54677590 tgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 34481155 - 34481105
Alignment:
Q  434 taatatctgatatgtggaccaatggttcacacgatattaaattactttttt 484  Q
    |||||||||||||||| | ||||| | |||| |||||||||||||||||||    
T  34481155 taatatctgatatgtgaatcaatgatccacaagatattaaattactttttt 34481105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaat 437  Q
    ||||||||||| ||||||||||||| || |||||||| |||||||  |||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  382 cctttctcggccttttggctaagatcaagtgtagtat 418  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 374 - 585
Target Start/End: Complemental strand, 10944509 - 10944297
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 473  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaa 10944410  T
Q  474 attacttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 572  Q
    ||||||||||||| |||| || |||| || |||||||||||||||||||||||| |||||   | || ||||||||||||||||||| ||||||||||||    
T  10944409 attacttttttgatggggagaagccattttagtagcttgctactaggcttcttgagtgtcactattgcgttgcactatagcattggtttggcgcacccca 10944310  T
Q  573 ccaattcaagttt 585  Q
    |||||||||||||    
T  10944309 ccaattcaagttt 10944297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 302 - 578
Target Start/End: Complemental strand, 41841335 - 41841058
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| |||||||| || |||| |   |||||||||||||||||||||||||||||||||||    
T  41841335 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggc 41841236  T
Q  401 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga-ggggggaggccac 499  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| || |||||    
T  41841235 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaattacttttttgatggggagaagccac 41841136  T
Q  500 ttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaatt 578  Q
       | |||||||||| | ||||||| | |||||| | |||||||||||||| ||| ||| ||||||||||||| |||||    
T  41841135 cccaatagcttgctattgggcttctcgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccatcaatt 41841058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 377 - 595
Target Start/End: Original strand, 40054312 - 40054531
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T
Q  477 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 575  Q
    ||||||||||||||| |||||||||| | |||||||||| | ||||||||  ||||||   |||||||||||||| ||||  |  |||||||||||||||    
T  40054412 acttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcataagcttggcgcaccccacca 40054511  T
Q  576 attcaagtttaaatttttat 595  Q
    || | |||| || |||||||    
T  40054512 atactagttcaattttttat 40054531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 379 - 575
Target Start/End: Original strand, 37679757 - 37679953
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  479 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 575  Q
    ||| ||||||||| ||||||||    ||||||||||| | ||| || | ||||||| |  ||||||||||||||||| ||||||||||||||||||||    
T  37679857 tttattgagggggagaggccaccacggtagcttgctattgggcctc-tctgtgtcgcctttgtgttgcactatagcaatggtctggcgcaccccacca 37679953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 371 - 491
Target Start/End: Original strand, 44878977 - 44879097
Alignment:
Q  371 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatat 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||| |||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44879076  T
Q  471 taaattacttttttgaggggg 491  Q
    |||||||||||||||||||||    
T  44879077 taaattacttttttgaggggg 44879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 371 - 491
Target Start/End: Complemental strand, 44880944 - 44880824
Alignment:
Q  371 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatat 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||| |||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44880845  T
Q  471 taaattacttttttgaggggg 491  Q
    |||||||||||||||||||||    
T  44880844 taaattacttttttgaggggg 44880824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 377 - 577
Target Start/End: Original strand, 37682057 - 37682258
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 476  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T
Q  477 acttttttgagg-ggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 575  Q
      |||||| |||  | ||| ||||  || |||||||||| ||||  |||   ||||| ||  |  |||||||||| ||||||||||||||| ||||||||    
T  37682157 tgtttttttaggatgagagtccaccaaaatagcttgctattaggtctctcaagtgtcatctttacgttgcactattgcattggtctggcgcgccccacca 37682256  T
Q  576 at 577  Q
    ||    
T  37682257 at 37682258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 302 - 477
Target Start/End: Complemental strand, 42555266 - 42555090
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||| | ||||||||||||| |||||||||||||||||||  |||  ||  || |||||||||||||||||||| |  ||||||||    
T  42555266 agtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatcttttggc 42555167  T
Q  401 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 477  Q
    |||||||||||| || ||||||| ||||| ||||||||| ||||||||||  |||||  ||||||||||||||||||    
T  42555166 taagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 302 - 450
Target Start/End: Complemental strand, 42221027 - 42220880
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgagggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggct 401  Q
    |||||||||||| | ||||  ||||| |||||  |||| ||| |||||||| || | ||||| | | |||||||||||||| ||| |||| |||||||||    
T  42221027 agtcccacatcgctagttctagaaagtaagtggtggatatgagatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggct 42220928  T
Q  402 aagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 450  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  42220927 aagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 44582870 - 44582965
Alignment:
Q  394 ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggg 489  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |||||| |   | ||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgaggg 44582965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 301 - 450
Target Start/End: Original strand, 42091944 - 42092093
Alignment:
Q  301 aagtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttgg 399  Q
    ||||||||||||||| ||||| |||||||| |||| |||  ||| ||||||||||| |||| |   ||||||| |||||||||||||||  ||||||||     
T  42091944 aagtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg- 42092042  T
Q  400 ctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 450  Q
    |||| || ||||||| ||| |||||||||| ||||||||||||||||||||    
T  42092043 ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 44583111 - 44583162
Alignment:
Q  431 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 483  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  44583111 gtttaatatctgatatgtgaac-aatggtacacacgatattaaattacttttt 44583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 42554709 - 42554655
Alignment:
Q  437 tatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 491  Q
    ||||||||||||||  |||||  | |||||||||||||||| |||||||||||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgaggggg 42554655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 593
Target Start/End: Complemental strand, 42872471 - 42872408
Alignment:
Q  528 gtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 593  Q
    |||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||| |||||    
T  42872471 gtgtcgtctatgtgttgcactattgca-tgggctgacgcaccccaccaatt-aagtttaatttttt 42872408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 370 - 593
Target Start/End: Original strand, 7524961 - 7525185
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgata 469  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgata 7525060  T
Q  470 ttaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcac 568  Q
    |||||||||||||||||||||| |||||| | | ||||||||||| || || ||||  ||||||||| ||| |||||||||| |||| ||   |||||||    
T  7525061 ttaaattacttttttgagggggagaggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgcac 7525160  T
Q  569 cccaccaattcaagtttaaattttt 593  Q
    ||||||||||  ||||||| |||||    
T  7525161 cccaccaattttagtttaatttttt 7525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 302 - 491
Target Start/End: Complemental strand, 1716634 - 1716444
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||  | |||||||  ||||||| |||||||||||||||||||||||||||    
T  1716634 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 1716536  T
Q  401 taagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggacc-aatggttcacacgatattaaattacttttttgaggggg 491  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  1716535 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaattacttttttaaggggg 1716444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 336 - 580
Target Start/End: Original strand, 3643599 - 3643843
Alignment:
Q  336 ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggttta 435  Q
    |||||||  |||||||| || ||||||||    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3643599 ggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 3643698  T
Q  436 atatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgt 534  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||| ||  | |    | |||||||||| | || |||| | |||| |     
T  3643699 atatctgatatgtggcccattgggtcacacgatattaaattacttttttaagggggagaaactatcacaatagcttgctattgggtttctcgagtgttgc 3643798  T
Q  535 caatgtgttgcactatagcattggtctggcgcaccccaccaattca 580  Q
      |||||||||||||| ||||||| |||||||||||||||||||||    
T  3643799 ttatgtgttgcactattgcattgg-ctggcgcaccccaccaattca 3643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 381 - 489
Target Start/End: Original strand, 4103249 - 4103357
Alignment:
Q  381 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactt 480  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||| |||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctt 4103348  T
Q  481 ttttgaggg 489  Q
    |||| ||||    
T  4103349 tttttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 410 - 514
Target Start/End: Original strand, 5350672 - 5350777
Alignment:
Q  410 gtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg-ggaggccacttaagtagc 508  Q
    ||||||||||| || ||||| ||||||||||||||||||||  ||||||| ||||||||||||||||  ||| ||||||||  ||| ||||  |||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagc 5350771  T
Q  509 ttgcta 514  Q
    ||||||    
T  5350772 ttgcta 5350777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 486
Target Start/End: Original strand, 16037861 - 16037966
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 478  Q
    |||| |||||||||| |||  ||||||||||||||||||| |||||||||    ||||||| ||||| |||| | ||||| ||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  479 ttttttga 486  Q
    ||||||||    
T  16037959 ttttttga 16037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgt 448  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 491
Target Start/End: Original strand, 13636366 - 13636426
Alignment:
Q  431 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 491  Q
    ||||||||||||||||||||| ||| ||| |||||| ||||||||||  || |||||||||    
T  13636366 gtttaatatctgatatgtggatcaacggtccacacggtattaaattaagttcttgaggggg 13636426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 368 - 533
Target Start/End: Complemental strand, 10796006 - 10795840
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacga 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||    
T  10796006 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacga 10795907  T
Q  468 tattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcg 533  Q
    |||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    
T  10795906 tattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcg 10795840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 368 - 592
Target Start/End: Complemental strand, 10791768 - 10791543
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacga 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||| ||    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatga 10791669  T
Q  468 tattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgc 566  Q
    |||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    || |||||||||| ||||  ||  ||  |    
T  10791668 tattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgctcgtgcgttgcactattgcatgagttaggtac 10791569  T
Q  567 accccaccaattcaagtttaaatttt 592  Q
    ||||||||||||| ||||||| ||||    
T  10791568 accccaccaattctagtttaactttt 10791543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 377 - 574
Target Start/End: Original strand, 30521242 - 30521440
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 476  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  477 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 574  Q
      ||||||||||||| ||| |||||    |||||||||| | ||  |||   ||||||||  ||  ||||||||| ||||||| |||||||||||||||    
T  30521342 tattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctttgcactattgcattggcctggcgcaccccacc 30521440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 431 - 574
Target Start/End: Original strand, 13136608 - 13136752
Alignment:
Q  431 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggggag-gccacttaagtagcttgctactaggcttcttgtgt 529  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  | |||| |  ||||||||||||||  ||||||  |||    
T  13136608 gtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggaggagccattgcagtagcttgctactctgcttctcttgt 13136707  T
Q  530 gtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 574  Q
    ||||  |||| |||||||||||||||| || ||||||||||||||    
T  13136708 gtcgctaatgcgttgcactatagcattagtttggcgcaccccacc 13136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaat--t 476  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| | | ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  477 acttttttgaggg 489  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 420 - 491
Target Start/End: Original strand, 11333273 - 11333344
Alignment:
Q  420 tgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 491  Q
    |||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgaggggg 11333344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 10509478 - 10509551
Alignment:
Q  503 agtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 576  Q
    |||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||  ||| ||||||||||||    
T  10509478 agtagcttgctactcggcttcttgtgtgtcgctaatgcgttgcactatagcattggcttggagcaccccaccaa 10509551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 483  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||| ||||||||||| ||||||||  |||||  |||||  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 377 - 491
Target Start/End: Original strand, 27134511 - 27134625
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 476  Q
    |||||||||| ||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||||||| | ||||  ||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  477 acttttttgaggggg 491  Q
    |||||||||||||||    
T  27134611 acttttttgaggggg 27134625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 491
Target Start/End: Original strand, 8128149 - 8128256
Alignment:
Q  383 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactttt 482  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| |  ||||||||| |||||||||| ||||||| |||||| ||||||||||  |||     
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatttatttc 8128247  T
Q  483 ttgaggggg 491  Q
    |||||||||    
T  8128248 ttgaggggg 8128256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 425  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 5450 - 5507
Alignment:
Q  431 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 488  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||  ||||||||||    
T  5450 gtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgagg 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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