View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14040_low_52 (Length: 201)

Name: NF14040_low_52
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14040_low_52
NF14040_low_52
[»] chr7 (8 HSPs)
chr7 (16-184)||(17825539-17825707)
chr7 (16-185)||(17849030-17849199)
chr7 (30-184)||(14606407-14606561)
chr7 (30-184)||(16025584-16025738)
chr7 (16-184)||(16173060-16173228)
chr7 (30-186)||(15664697-15664853)
chr7 (16-181)||(16103395-16103560)
chr7 (30-169)||(15676531-15676670)
[»] scaffold0289 (2 HSPs)
scaffold0289 (13-185)||(5006-5178)
scaffold0289 (13-185)||(13839-14011)
[»] chr1 (7 HSPs)
chr1 (30-184)||(15032955-15033109)
chr1 (30-184)||(15037522-15037676)
chr1 (30-184)||(14532200-14532354)
chr1 (30-184)||(14468306-14468460)
chr1 (30-184)||(15011503-15011657)
chr1 (30-184)||(15002610-15002764)
chr1 (113-178)||(14522162-14522227)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 4e-86; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 17825539 - 17825707
Alignment:
Q  16 atccatgcagttttacaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17825539 atccatgcagttttacaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatatactattga 17825638  T
Q  116 atggagttttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17825639 atggagctttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 17825707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 17849199 - 17849030
Alignment:
Q  16 atccatgcagttttacaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattga 115  Q
    |||||| ||| || |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| | |||| |||||||| || || |||    
T  17849199 atccatacagcttcacaatgttacgatgtcgaatttctatcaaagcttggatctcacttgtgaaagattttaggctggaatcttcttcatctattactga 17849100  T
Q  116 atggagttttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcct 185  Q
    |||||||||||| ||||| ||||||||||||||||| ||  | ||||||||||||||||| |||||||||    
T  17849099 atggagttttttcacagccactacttgacctgtgtccaacacggctttgtaaacacttccctgccctcct 17849030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14606561 - 14606407
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    ||||| ||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |||| ||||||| ||| | ||| ||||||||| ||||| |    
T  14606561 acaatattacgatgtcgaatttcggtcagagcttggatctcatttgtgaatgattttagatttggattttctccatttgctactgaatggagctttttca 14606462  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||||||||||||||||||||  || | ||||||||| |||||||||||||||||    
T  14606461 cagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctcc 14606407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 16025738 - 16025584
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    ||||| ||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |||| ||||||| ||| | ||| ||||||||| ||||| |    
T  16025738 acaatattacgatgtcgaatttcggtcagagcttggatctcatttgtgaatgattttagatttggattttctccatttgctactgaatggagctttttca 16025639  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||||||||||||||||||||  || | ||||||||| |||||||||||||||||    
T  16025638 cagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctcc 16025584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 16173228 - 16173060
Alignment:
Q  16 atccatgcagttttacaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttga-attttcttcatgtactattg 114  Q
    |||||| ||| || ||||| ||||||||||||||||| ||||  |||||||||||| |||||||||||||| ||  ||| |||||| |||| |   | ||    
T  16173228 atccatacagattcacaatattacgatgtcgaatttcagtcaaagcttggatctcatttgtgaaagatttt-ggactgagattttcctcatttgaaactg 16173130  T
Q  115 aatggagttttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
     |||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  16173129 gatggagctttttcacagcaactacttgacctgtgtgtaactctgctttgtaaacacttccttgccctcc 16173060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 15664697 - 15664853
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    |||||||||||||| ||||||||||||||  ||||||||||| |||  ||| ||||||| |  ||||| ||  |||    || |||||||||||||||||    
T  15664697 acaatgttacgatgccgaatttctgtcagaacttggatctcatttgcaaaacattttagatcagaattctccgcattcgttactgaatggagttttttaa 15664796  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcctg 186  Q
    ||||||||||||||||||||   || | |||||||||||||||||| ||| ||||||    
T  15664797 cagcaactacttgacctgtgggcaactttgctttgtaaacacttccttgcgctcctg 15664853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 16103560 - 16103395
Alignment:
Q  16 atccatgcagttttacaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattga 115  Q
    |||||||||  || ||||| |||||||||| |||||| || || |||||||| ||| |||||||||||||||| || | ||||||  ||| | | | |||    
T  16103560 atccatgcaacttcacaatattacgatgtctaatttcggttagagcttggatttcatttgtgaaagattttagattgggattttcaccatttgccactga 16103461  T
Q  116 atggagttttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccc 181  Q
    |||||| ||||| |||||||||||||| || ||||  || | ||||||||| ||||||||||||||    
T  16103460 atggagctttttcacagcaactacttggcccgtgtgcaactttgctttgtagacacttccatgccc 16103395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 15676531 - 15676670
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    ||||||||||||||  ||||||||||||| ||||| |||||| ||| |||| | ||||| |   ||||||| |||| |  || |||||||| ||||||||    
T  15676531 acaatgttacgatgctgaatttctgtcagagcttgaatctcatttgcgaaacagtttagatcaaaattttcctcatttgttactgaatggaattttttaa 15676630  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaac 169  Q
    ||||||||||||||||||  |  || ||||||||||||||    
T  15676631 cagcaactacttgacctgaatgcaaatctgctttgtaaac 15676670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 5006 - 5178
Alignment:
Q  13 aatatccatgcagttttacaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactat 112  Q
    |||||||||  || || |||||||||| |||||||||||||||||  |||| ||||||| |||  ||| ||||||| |  ||||||||  ||| |  |||    
T  5006 aatatccatatagcttcacaatgttacaatgtcgaatttctgtcaaagctttgatctcatttgcaaaacattttagatcagaattttccgcatttgttat 5105  T
Q  113 tgaatggagttttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcct 185  Q
    ||||||||||||||||||||||||||||||||||| |   || |||||||||||||||||||| ||| |||||    
T  5106 tgaatggagttttttaacagcaactacttgacctgagggcaactctgctttgtaaacacttccttgcgctcct 5178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 13839 - 14011
Alignment:
Q  13 aatatccatgcagttttacaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactat 112  Q
    |||||||||  || || |||||||||| |||||||||||||||||  |||| ||||||| |||  ||| ||||||| |  ||||||||  ||| |  |||    
T  13839 aatatccatatagcttcacaatgttacaatgtcgaatttctgtcaaagctttgatctcatttgcaaaacattttagatcagaattttccgcatttgttat 13938  T
Q  113 tgaatggagttttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcct 185  Q
    ||||||||||||||||||||||||||||||||||| |   || |||||||||||||||||||| ||| |||||    
T  13939 tgaatggagttttttaacagcaactacttgacctgagggcaactctgctttgtaaacacttccttgcgctcct 14011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 15033109 - 15032955
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    |||||||| |||||||||||||||||||  || ||||||||| ||||||||| ||| || || |   ||||||||| |  || |||||| ||||| || |    
T  15033109 acaatgttgcgatgtcgaatttctgtcaaagcatggatctcatttgtgaaagctttcagattaggcatttcttcattttgtaatgaatgaagtttcttca 15033010  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||| || ||||||||||||   || ||||||||||||||||||||||| |||||    
T  15033009 cagctacaacttgacctgtgggcaactctgctttgtaaacacttccatgtcctcc 15032955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 15037676 - 15037522
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    |||||||| |||||||||||||||||||  || ||||||||| ||||||||||||| || || ||  |||| |||| |  || |||||| ||||| || |    
T  15037676 acaatgttgcgatgtcgaatttctgtcaaagcatggatctcatttgtgaaagatttcagattagacatttcctcattttgtaatgaatgaagtttcttca 15037577  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||| || ||||||||||||   || ||||||||||||||| ||||||| |||||    
T  15037576 cagctacaacttgacctgtgggcaactctgctttgtaaacatttccatgtcctcc 15037522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 14532200 - 14532354
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    ||||| || ||||||||||||||| |||  || ||||||||| ||||||| | ||| || || ||  ||||||||| |  || ||| || ||||| || |    
T  14532200 acaatattgcgatgtcgaatttctttcaaagcatggatctcatttgtgaatgctttcagattagacatttcttcattttgtaatgagtgaagtttcttca 14532299  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    ||||||| |||||||||||    || |||||||||||||||||||||||||||||    
T  14532300 cagcaacaacttgacctgtaggcaactctgctttgtaaacacttccatgccctcc 14532354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14468460 - 14468306
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    |||||||| |||||||| |||||||| |  ||||||||||||||||  || | ||| || || ||  ||||| ||| |  || |||||||||||| || |    
T  14468460 acaatgtttcgatgtcggatttctgttaaagcttggatctcacttgcaaatgctttcagattggacatttctccattttgtaatgaatggagtttcttca 14468361  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||| || |||||||||||    || ||||||||||||||||||||||| |||||    
T  14468360 cagctacaacttgacctgtaggcaactctgctttgtaaacacttccatgtcctcc 14468306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 15011657 - 15011503
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    |||||||| |||||||||||||||||||  || ||||||||| ||||||||| |||  | ||||   ||||||||| |  || ||| || ||||| || |    
T  15011657 acaatgttgcgatgtcgaatttctgtcaaagcatggatctcatttgtgaaagctttccgatttggcatttcttcattttgtaatgagtgaagtttcttca 15011558  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||| || |||||||||||    | |||||||||||||||| ||||||| |||||    
T  15011557 cagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctcc 15011503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 15002764 - 15002610
Alignment:
Q  30 acaatgttacgatgtcgaatttctgtcagtgcttggatctcacttgtgaaagattttaggtttgaattttcttcatgtactattgaatggagttttttaa 129  Q
    |||||||| |||||||||||||||||||  || ||||||||| ||||||||| |||    ||||   ||||||||| |  || ||| || ||||| || |    
T  15002764 acaatgttgcgatgtcgaatttctgtcaaagcatggatctcatttgtgaaagctttcctatttggcatttcttcattttgtaatgagtgaagtttcttca 15002665  T
Q  130 cagcaactacttgacctgtgtctaattctgctttgtaaacacttccatgccctcc 184  Q
    |||| || |||||||||||    | |||||||||||||||| ||||||| |||||    
T  15002664 cagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctcc 15002610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 14522162 - 14522227
Alignment:
Q  113 tgaatggagttttttaacagcaactacttgacctgtgtctaattctgctttgtaaacacttccatg 178  Q
    |||||||||||| || ||||| || |||||||||||    || |||||||||||||||||||||||    
T  14522162 tgaatggagtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatg 14522227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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