View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14040_low_8 (Length: 544)
Name: NF14040_low_8
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14040_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 24281402 - 24281708
Alignment:
| Q |
11 |
cagagacggtcatcattagcaaatcatcattcttaacaccaagggcactcaatttctgggaattgctcacctcattcccattgaacagaatctgttgttg |
110 |
Q |
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| T |
24281402 |
cagagacggtcatcattagcaaatcatcattcttaacaccaagggcactcaatttctgggaattgcccacctcattcccattgaacagaatctgttgttg |
24281501 |
T |
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| Q |
111 |
ctgaataggcacacttgtcttttcataacacaagtttaacatcaaacaaacacaattagtaagccaaccacaaattaaaaccatataagattcaacatca |
210 |
Q |
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| T |
24281502 |
ctgaataggcacacttgtcttttcataacacaagtttaacatcaaacaaacacaattagtaagccaaccacaaattaaaaccatataagattcaacatca |
24281601 |
T |
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| Q |
211 |
cttgttatctcaaatttaaacacatgaatcaatcaccaatataatcaaaaagataatctcatatcggattaaatttctaggttataataatgataattgt |
310 |
Q |
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| T |
24281602 |
cttgttatctcaaatttaaacacatgaatcaaccaccaatataatcaaaaagataatctcatatgggattaaatttctaggttataataatgataattgt |
24281701 |
T |
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| Q |
311 |
atgaccc |
317 |
Q |
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| T |
24281702 |
atgaccc |
24281708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 392 - 464
Target Start/End: Original strand, 24281763 - 24281835
Alignment:
| Q |
392 |
cgagatgggtattggagaataatgaactcacctcaacctcaagtaatgccttaacattttccacctatatcac |
464 |
Q |
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| T |
24281763 |
cgagatgggtattggagaataatgaactcacctcaacctcaagtaatgccttaacattttccacctatatcac |
24281835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 30454172 - 30454220
Alignment:
| Q |
416 |
aactcacctcaacctcaagtaatgccttaacattttccacctatatcac |
464 |
Q |
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| T |
30454172 |
aactcaccttaacctcaagtattgccttaacgttttccacgtatatcac |
30454220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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