View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14040_low_9 (Length: 542)

Name: NF14040_low_9
Description: NF14040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14040_low_9
NF14040_low_9
[»] chr2 (4 HSPs)
chr2 (23-303)||(41754526-41754802)
chr2 (316-511)||(28136756-28136943)
chr2 (8-301)||(3395590-3395877)
chr2 (27-245)||(5789028-5789244)
[»] chr8 (9 HSPs)
chr8 (17-301)||(23141942-23142223)
chr8 (8-303)||(42797423-42797713)
chr8 (8-304)||(13756200-13756485)
chr8 (90-301)||(10901547-10901753)
chr8 (26-206)||(21588990-21589165)
chr8 (258-302)||(41529080-41529124)
chr8 (251-301)||(15278111-15278161)
chr8 (251-301)||(15458480-15458530)
chr8 (258-302)||(18432525-18432569)
[»] chr4 (7 HSPs)
chr4 (18-301)||(50814456-50814733)
chr4 (8-301)||(13228353-13228641)
chr4 (26-206)||(39974599-39974775)
chr4 (26-218)||(49953180-49953374)
chr4 (77-218)||(281679-281816)
chr4 (251-301)||(24183795-24183845)
chr4 (261-301)||(42757967-42758007)
[»] chr3 (9 HSPs)
chr3 (8-301)||(50332064-50332353)
chr3 (26-202)||(12746150-12746321)
chr3 (26-136)||(36095931-36096041)
chr3 (258-302)||(17763829-17763873)
chr3 (258-302)||(19065149-19065193)
chr3 (251-301)||(6435579-6435629)
chr3 (259-301)||(42400680-42400722)
chr3 (258-292)||(50239320-50239354)
chr3 (257-301)||(20788204-20788248)
[»] chr7 (4 HSPs)
chr7 (92-301)||(15721438-15721643)
chr7 (258-303)||(29502513-29502558)
chr7 (258-301)||(17475014-17475057)
chr7 (258-301)||(17578157-17578200)
[»] chr6 (7 HSPs)
chr6 (92-301)||(1594479-1594684)
chr6 (17-97)||(1599542-1599622)
chr6 (25-132)||(26894729-26894835)
chr6 (180-292)||(26894613-26894725)
chr6 (259-301)||(28365452-28365494)
chr6 (260-301)||(20872244-20872285)
chr6 (257-302)||(33350577-33350622)
[»] scaffold0159 (1 HSPs)
scaffold0159 (27-245)||(33401-33617)
[»] chr1 (5 HSPs)
chr1 (25-286)||(43387253-43387509)
chr1 (259-305)||(30002059-30002105)
chr1 (257-302)||(19066029-19066074)
chr1 (257-302)||(19113919-19113964)
chr1 (257-301)||(8313153-8313197)
[»] scaffold0380 (1 HSPs)
scaffold0380 (25-136)||(14347-14458)
[»] chr5 (2 HSPs)
chr5 (26-218)||(33014030-33014218)
chr5 (25-122)||(38016086-38016182)
[»] scaffold0036 (1 HSPs)
scaffold0036 (157-232)||(50473-50548)
[»] scaffold0284 (1 HSPs)
scaffold0284 (257-306)||(3042-3091)
[»] scaffold0119 (1 HSPs)
scaffold0119 (260-305)||(40351-40396)
[»] scaffold0191 (1 HSPs)
scaffold0191 (250-301)||(4817-4868)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 41754526 - 41754802
Alignment:
Q  23 cagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacat 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41754526 cagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacat 41754625  T
Q  123 tttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaatattgagatttaacata 222  Q
     |||||||||||||    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41754626 cttcatccaaaatt----taaagtcttaagtatatgagtttattttcacttatttactcttcaacctccaatattttatccaatattgagatttaacata 41754721  T
Q  223 catttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagtat 303  Q
    ||||||||||||||||| |||||||  ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  41754722 catttaatactttacaacattctctcccttaaggatgacgaaattctagcccgtgcttggcacgggtgtccatgctagtat 41754802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 316 - 511
Target Start/End: Complemental strand, 28136943 - 28136756
Alignment:
Q  316 agtgaaccttagatctgccaccaccaaaccaccgcggcaccaccgcactcatcctccaccgtccactctgtgttgcctcacgctnnnnnnnnnnnnnnnn 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  28136943 agtgaaccttagatctgccaccaccaaaccaccgcggcaccaccgcactcatcctccaccgtccactctgtgttgcctcacgcttctctctct------- 28136851  T
Q  416 naccgtaactctactgtcacgccgtcgcgcccccacaccgcaagcttcatcatctccaattcttggtgagtcatattctctattcaatcttacttt 511  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28136850 -accgtaactctactgtcacgccgtcgcacccccacaccgcaagcttcatcatctccaattcttggtgagtcatcttctctattcaatcttacttt 28136756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 3395590 - 3395877
Alignment:
Q  8 ccaagaatattgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtg 107  Q
    |||| ||| ||||| | ||||||||||||||||||  |||||||||| || |||| ||||||||||||||||| ||||| ||||||||||||||| ||||    
T  3395590 ccaaaaatgttgaagcggatatgatatcaccattggaacttatgggg-agacaacacttgtgtgaatcgacacgttgcagaaagagcaatcacacaagtg 3395688  T
Q  108 ataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaata 207  Q
    | |||||||||||||||||||||||||||    | ||| ||||| ||| ||| ||  |||| ||||||||  |||||||||||||||||||||||||||     
T  3395689 aaaatgatgttacattttcatccaaaatt----ttaagacttaagtatatgatttattttttacttatttgttcttcaacctccaatattttatccaatg 3395784  T
Q  208 ttgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||| |||||||  ||| || |||  | || |||||||||   || |   ||||| ||||| ||||||||||||||||||||||| || |||||    
T  3395785 ttgatatttaactgacacttgatatatcac-atattctctccattgaaaatgacgtaattctagcccgtgcttggcacgggtgtccatactagt 3395877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 5789028 - 5789244
Alignment:
Q  27 tatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatc--gacacattgcataaagagcaatcacacgagtgataatgatgttacattt 124  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||   ||||||||||| ||||||||||||||| ||||| ||||||||||||| |    
T  5789028 tatgatatcaacattgagacttatgggg-agccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgttacatct 5789126  T
Q  125 tcatccaaaattaatttaaagtcttaaatatgtgagttta-ttttcacttatttactcttcaacctccaatattttatccaatattgagatttaacatac 223  Q
    ||||||||    || || ||| ||||| |   | ||| || |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||  ||    
T  5789127 tcatccaa----aacttcaagacttaactgaataagtctatttttcacttatttgttcttcaacctccaatgttttatccaatattgagatttaactgac 5789222  T
Q  224 atttaatactttacaatattct 245  Q
    | || |||| ||||||||||||    
T  5789223 acttgatacattacaatattct 5789244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 23141942 - 23142223
Alignment:
Q  17 ttgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatg 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23141942 ttgaagcagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatg 23142041  T
Q  117 ttacattttcatccaaaattaatttaaagtcttaaatatgtgagttt-attttcacttatttactcttcaacctccaatattttatccaatattgagatt 215  Q
    |||||| |||||||||||||    ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23142042 ttacatcttcatccaaaatt----taaagtcttaagtatttgagttttattttcacttatttactcttcaacctccaatattttatccaatattgagatt 23142137  T
Q  216 taacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||||||||||||||||||| ||||||||||  ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  23142138 taacatacatttaatactttaaaatattctctcccttaaggatgacgaaattctagcccgtgcttggcacgggtgtccatgctagt 23142223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 42797423 - 42797713
Alignment:
Q  8 ccaagaatattgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtg 107  Q
    |||| ||| ||||| ||||||||||||||||||||||||||| | || ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42797423 ccaaaaatgttgaagcagatatgatatcaccattgagacttacgagg-agcaaacacttgtgtgaatcgacacattgcagaaagagcaatcacacgagtg 42797521  T
Q  108 ataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaata 207  Q
    |||||||||| |||| |||||||||||||    ||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42797522 ataatgatgtcacatcttcatccaaaatt----taaagtcttaagtataagagtttattttcacttatttactctccaacctccaatattttatccaata 42797617  T
Q  208 ttgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagtat 303  Q
    || |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||  ||||||| ||||||||||||||| ||||||||||    
T  42797618 ttaagatttaacatacatttaatactttacaatattctctcccttaaggatgacgaaattttagcccgtacttggcacgggtgtccatgctagtat 42797713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 13756485 - 13756200
Alignment:
Q  8 ccaagaatattgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtg 107  Q
    |||| ||| ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  13756485 ccaaaaatgttgaagcagatatgatatcaccattgggacttatgtggaagccaacgcttgtgtgaatcgacacattgcagaaagagcaatcacacaagtg 13756386  T
Q  108 ataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaata 207  Q
    ||||||||||||||| |||||||||||||    ||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13756385 ataatgatgttacatcttcatccaaaatt----taaagt-------atatgagtttattttcacttatttactcttcaacctccaatattttatccaata 13756297  T
Q  208 ttgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagtata 304  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||  | ||||||||||  ||||||||||||||||||||||| |||||||||||    
T  13756296 ttgagatttaacatatatttaatactttacaatattctctcccttagagatgacgaaattttagcccgtgcttggcacgggtgtccatgctagtata 13756200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 90 - 301
Target Start/End: Original strand, 10901547 - 10901753
Alignment:
Q  90 agagcaatcacacgagtgataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacct 189  Q
    ||||||||| ||| ||||| ||||||||||||| |||||||||||||||      | ||||||||| | | ||  |||||| |||| |  ||||||||||    
T  10901547 agagcaatcgcacaagtgaaaatgatgttacatcttcatccaaaattaa------gacttaaatatataatttatttttcatttatatgttcttcaacct 10901640  T
Q  190 ccaatattttatccaatattgagatttaacata-catttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacggg 288  Q
    ||||||||||||||||| ||||||||||||  | || || |||| ||||||||||||||   || ||| ||||||||||| |||||||||||||||| ||    
T  10901641 ccaatattttatccaatgttgagatttaactgaacacttgatacattacaatattctctccattgaggatgacgaaattctagcccgtgcttggcacagg 10901740  T
Q  289 tgtctatgctagt 301  Q
    ||||||| |||||    
T  10901741 tgtctatactagt 10901753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 21588990 - 21589165
Alignment:
Q  26 atatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacatttt 125  Q
    |||||||||||||||||  ||||| ||||||| |||| ||||||||| ||||||||||||| ||| | ||| |||||  |||| ||||||||  ||| ||    
T  21588990 atatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtcgcatctt 21589089  T
Q  126 catccaaaattaatttaaagtcttaaatatgtgagtttatttt-cacttatttactcttcaacctccaatattttatccaat 206  Q
    | | |||    ||||| ||| ||| | ||  ||||||| |||| |||||||||  ||||| |||||||||||||||||||||    
T  21589090 ctttcaa----aattttaaggctttagta--tgagttttttttccacttatttgttcttcgacctccaatattttatccaat 21589165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 41529080 - 41529124
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtctatgctagta 302  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||    
T  41529080 tgacgaaattctagcccgtgcttggcacgggtgtccatactagta 41529124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 15278111 - 15278161
Alignment:
Q  251 ttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||| |||||||||||| ||||||||||||||||| || || ||||||||    
T  15278111 ttaagtttgacgaaattctagcccgtgcttggcacgagtttccatgctagt 15278161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 15458480 - 15458530
Alignment:
Q  251 ttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||| |||||||||||| ||||||||||||||||| || || ||||||||    
T  15458480 ttaagtttgacgaaattctagcccgtgcttggcacgagtttccatgctagt 15458530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 18432525 - 18432569
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtctatgctagta 302  Q
    |||| |||||| ||||||||||||||||||||||| || ||||||    
T  18432525 tgacaaaattctagcccgtgcttggcacgggtgtccatactagta 18432569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 50814733 - 50814456
Alignment:
Q  18 tgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt 117  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50814733 tgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt 50814634  T
Q  118 tacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaatattgagattta 217  Q
    ||||| |||||||||||||    ||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50814633 tacatcttcatccaaaatt----taaagtcttaagtatgtg--tttattttcacttatttactcttcaacctccaatattttatccaatattgagattta 50814540  T
Q  218 acatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||||||||||||||||||||| |||||||  ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  50814539 acatacatttaatactttacaacattctctcccttaaggatgacgaaattctagcccgtgcttggcacgggtgtccatgctagt 50814456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 13228641 - 13228353
Alignment:
Q  8 ccaagaatattgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtg 107  Q
    |||| ||| ||||| | ||||||||||||||||||| |||||||||| ||||||| |||||||||||| || ||||||| ||||||||||||||| ||||    
T  13228641 ccaaaaatgttgaagcggatatgatatcaccattgaaacttatgggg-agccaacacttgtgtgaatcaacgcattgcagaaagagcaatcacacaagtg 13228543  T
Q  108 ataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaata 207  Q
    | ||||||||||||||||||| |||    ||||| ||| |||||  || ||| ||  |||||||||||||  ||||||||||||||||| |||||||||     
T  13228542 aaaatgatgttacattttcattcaa----aattttaagacttaaggatatgatttatttttcacttatttgttcttcaacctccaatatcttatccaatg 13228447  T
Q  208 ttgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||| ||||||   ||| || |||| | ||||||||||||   || |   ||||||||||| ||||||||||||||||||||||| || |||||    
T  13228446 ttgatatttaagtgacacttgatacatcacaatattctctccattgaaaatgacgaaattctagcccgtgcttggcacgggtgtccatactagt 13228353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 39974775 - 39974599
Alignment:
Q  26 atatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacatttt 125  Q
    |||||||||||||||||  ||||| ||||||| |||| ||||||||| ||||||||||||| ||| | ||| |||||  |||| ||||||||  ||| ||    
T  39974775 atatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtcgcatctt 39974676  T
Q  126 catccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaat 206  Q
    | |||||    ||||| ||| ||| | |||| |  ||| ||| |||||||||  ||||| |||||||||||||||||||||    
T  39974675 cttccaa----aattttaaggctttagtatgagtttttttttccacttatttgttcttcgacctccaatattttatccaat 39974599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 49953180 - 49953374
Alignment:
Q  26 atatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacatttt 125  Q
    ||||||||||||| ||| |||||| ||||||| |||| ||||||||| |||| |||||||| ||| | ||| ||||| ||||| ||||||||  | | ||    
T  49953180 atatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcgaaacattgcagaaaaaacaaccacacaagtgagaatgatgtcgcgtctt 49953279  T
Q  126 catccaaaattaatttaaagtcttaaatatgtgagtttatttt------cacttatttactcttcaacctccaatattttatccaatattgagatttaa 218  Q
    |||||||||||    | ||| ||| | ||| ||||||| ||||      |||||||||  ||||| ||||| |||||||||||||||  ||||||||||    
T  49953280 catccaaaatt----ttaaggctttagtatatgagttttttttttctttcacttatttgttcttcgacctctaatattttatccaatgatgagatttaa 49953374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 281816 - 281679
Alignment:
Q  77 acacattgcataaagagcaatcacacgagtgataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatt 176  Q
    |||||||||| ||| | ||| ||||| ||||| ||||||||  ||| |||||||||||||    | ||| ||| | ||| ||||||| ||||||||||||    
T  281816 acacattgcagaaaaaacaaccacacaagtgagaatgatgtcgcatcttcatccaaaatt----ttaaggctttagtatatgagttttttttcacttatt 281721  T
Q  177 tactcttcaacctccaatattttatccaatattgagatttaa 218  Q
    |  ||||| ||||||| |||||||||||||  ||||||||||    
T  281720 tgttcttcgacctccagtattttatccaatgatgagatttaa 281679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 24183795 - 24183845
Alignment:
Q  251 ttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||| |||| | ||||| ||||||||||||||||||||||| ||||||||    
T  24183795 ttaagtttgatggaattctagcccgtgcttggcacgggtgtccatgctagt 24183845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 42757967 - 42758007
Alignment:
Q  261 cgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  42757967 cgaaattctagcccgtgcttggcacgggtgtccatactagt 42758007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 50332064 - 50332353
Alignment:
Q  8 ccaagaatattgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtg 107  Q
    |||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  50332064 ccaaaaatgttgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgtcacattgcagaaagagcaatcacacgagtg 50332163  T
Q  108 ataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaata 207  Q
    ||||||||||||||| |||||||||||||    |||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50332164 ataatgatgttacatcttcatccaaaatt----taaagtattaagtatatgagtttattttcacttatttactcttcaacctctaatattttatccaata 50332259  T
Q  208 ttgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||  ||||||| ||||||||||| ||||| ||||||||||| ||||| || |||||    
T  50332260 ttgagatttaacatacattcaatacattacaatattctctcccttaaggatgacgaaattctagcccatgcttggcacgagtgtccatcctagt 50332353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 12746150 - 12746321
Alignment:
Q  26 atatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacatttt 125  Q
    ||||||||||||||||| || |||  |||||| |||| ||||||||| |||| |||||||| | | ||||||||||| ||||| ||||||||  ||| ||    
T  12746150 atatgatatcaccattgggaattacaggggagacaacacttgtgtgattcgatacattgcagaga-agcaatcacacaagtgagaatgatgtcgcatctt 12746248  T
Q  126 catccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatc 202  Q
    ||||||||||   ||||| || ||   ||| ||||||| |||||||||||||  ||||| | |||||||||||||||    
T  12746249 catccaaaat---tttaaggt-tttggtatatgagttttttttcacttatttgttcttcgatctccaatattttatc 12746321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 36096041 - 36095931
Alignment:
Q  26 atatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacatttt 125  Q
    ||||||||||||||||| ||| || ||||||  |||| ||||||||| ||||||||||||| ||| | ||| ||||   |||| ||||||||  ||| ||    
T  36096041 atatgatatcaccattgggacatacgggggatacaacacttgtgtgattcgacacattgcagaaaaaacaaccacaaaggtgagaatgatgtcgcatctt 36095942  T
Q  126 catccaaaatt 136  Q
    | |||||||||    
T  36095941 cttccaaaatt 36095931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 17763873 - 17763829
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtctatgctagta 302  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||    
T  17763873 tgacgaaattctagcccgtgcttggcacgggtgtccatactagta 17763829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 19065193 - 19065149
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtctatgctagta 302  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||    
T  19065193 tgacgaaattctagcccgtgcttggcacgggtgtccatactagta 19065149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 6435629 - 6435579
Alignment:
Q  251 ttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||| |||||| ||||| |||||||||||||||||||| || ||||||||    
T  6435629 ttaagtttgacggaattctagcccgtgcttggcacgggtttccatgctagt 6435579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 42400680 - 42400722
Alignment:
Q  259 gacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||    
T  42400680 gacgacattctagcccgtgcttggcacgggtgtccatgctagt 42400722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 50239354 - 50239320
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtc 292  Q
    ||||||||||| |||||||||||||||||||||||    
T  50239354 tgacgaaattctagcccgtgcttggcacgggtgtc 50239320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 20788248 - 20788204
Alignment:
Q  257 ttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||||||| || |||||||||||||||||||| || ||||||||    
T  20788248 ttgacgaaagtctagcccgtgcttggcacgggtttcaatgctagt 20788204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 92 - 301
Target Start/End: Original strand, 15721438 - 15721643
Alignment:
Q  92 agcaatcacacgagtgataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctcc 191  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    ||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  15721438 agcaatcacacgagtgataatgatgttacatcttcatccaaaatt----taaagtcttaagtatatgagtttattttcacttatttactattcaacctcc 15721533  T
Q  192 aatattttatccaatattgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  15721534 aatattttatccaatattgagatttaacatacatttaatactttacaatattctctcccttaaggatgacgaaattctagcctgtgcttggcacgagtgt 15721633  T
Q  292 ctatgctagt 301  Q
    | ||||||||    
T  15721634 ccatgctagt 15721643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 29502513 - 29502558
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtctatgctagtat 303  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||    
T  29502513 tgacgaaattctagcccgtgcttggcacgggtgtccatactagtat 29502558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 17475014 - 17475057
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||    
T  17475014 tgacaaaattctagcccgtgcttggcacgggtgtccatgctagt 17475057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 17578200 - 17578157
Alignment:
Q  258 tgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||    
T  17578200 tgacaaaattctagcccgtgcttggcacgggtgtccatgctagt 17578157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 92 - 301
Target Start/End: Complemental strand, 1594684 - 1594479
Alignment:
Q  92 agcaatcacacgagtgataatgatgttacattttcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctcc 191  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    ||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  1594684 agcaatcacacgagtgataatgatgttacatcttcatccaaaatt----taaagtcttaagtatatgagtttattttcacttatttactattcaacctcc 1594589  T
Q  192 aatattttatccaatattgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacgggtgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  1594588 aatattttatccaatattgagatttaacatacatttaatactttacaatattctctcccttaaggatgacgaaattctagcctgtgcttggcacgagtgt 1594489  T
Q  292 ctatgctagt 301  Q
    | ||||||||    
T  1594488 ccatgctagt 1594479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 1599622 - 1599542
Alignment:
Q  17 ttgaaccagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaat 97  Q
    ||||| || ||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  1599622 ttgaagcatatatgatatcacctttgggacttatgggggagccaatacttgtgtgaatcgacacattgcagaaagagcaat 1599542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 26894835 - 26894729
Alignment:
Q  25 gatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacattt 124  Q
    ||||| ||||||  |||| ||||||||||| |||||||  ||||||||||  |||||||||| |||||| |||||||| | ||| ||| ||||| ||| |    
T  26894835 gatattatatcattattgggacttatggggtagccaacagttgtgtgaatacacacattgcagaaagagaaatcacacaaatgagaat-atgtttcatct 26894737  T
Q  125 tcatccaa 132  Q
    ||||||||    
T  26894736 tcatccaa 26894729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 26894725 - 26894613
Alignment:
Q  180 tcttcaacctccaatattttatccaatattgagatttaacatacatttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgct 279  Q
    ||||||||||||||||||||||||||| ||||| ||||||  ||| ||  ||| | ||||||||||||   | || | ||||||||||| |||  ||| |    
T  26894725 tcttcaacctccaatattttatccaatgttgaggtttaactaacagttgttacatcacaatattctctccttcaaagatgacgaaattctagcttgtgat 26894626  T
Q  280 tggcacgggtgtc 292  Q
    || ||||||||||    
T  26894625 tgacacgggtgtc 26894613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 28365494 - 28365452
Alignment:
Q  259 gacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||    
T  28365494 gacgacattctagcccgtgcttggcacgggtgtccatgctagt 28365452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 20872285 - 20872244
Alignment:
Q  260 acgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    ||||||||| |||||||||||||||||||| |||| ||||||    
T  20872285 acgaaattctagcccgtgcttggcacgggtttctaagctagt 20872244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 33350577 - 33350622
Alignment:
Q  257 ttgacgaaattccagcccgtgcttggcacgggtgtctatgctagta 302  Q
    ||||||||| || |||||||||||||||||||| || |||||||||    
T  33350577 ttgacgaaagtctagcccgtgcttggcacgggtttccatgctagta 33350622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 33401 - 33617
Alignment:
Q  27 tatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatc--gacacattgcataaagagcaatcacacgagtgataatgatgttacattt 124  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||   ||||||||||| ||||||||||||||| ||||| ||||||||||||| |    
T  33401 tatgatatcaacattgagacttatgggg-agccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgttacatct 33499  T
Q  125 tcatccaaaattaatttaaagtcttaaatatgtgagttta-ttttcacttatttactcttcaacctccaatattttatccaatattgagatttaacatac 223  Q
    ||||||||    || || ||| ||||| |   | ||| || |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||  ||    
T  33500 tcatccaa----aacttcaagacttaactgaataagtctatttttcacttatttgttcttcaacctccaatgttttatccaatattgagatttaactgac 33595  T
Q  224 atttaatactttacaatattct 245  Q
    | || |||| ||||||||||||    
T  33596 acttgatacattacaatattct 33617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 286
Target Start/End: Original strand, 43387253 - 43387509
Alignment:
Q  25 gatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacattt 124  Q
    |||||||||||||||||| ||||||||||| | ||||| ||||||||||| |||||| || | ||| ||||||||||| ||||| ||| ||||||||| |    
T  43387253 gatatgatatcaccattgggacttatgggg-atccaacacttgtgtgaattgacacaatgtagaaaaagcaatcacacaagtgaaaataatgttacatct 43387351  T
Q  125 tcatccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaatattgagatttaacataca 224  Q
    ||||||||||||    | ||| ||||| ||| ||| ||  ||||||||||| |  ||||||||||||||||||||||||||  |||| ||||||   |||    
T  43387352 tcatccaaaatt----ttaagacttaagtatatgatttatttttcacttatatgttcttcaacctccaatattttatccaacgttgaaatttaattgaca 43387447  T
Q  225 tttaatactttacaatattctctttcttaaggttgacgaaattccagcccgtgcttggcacg 286  Q
     || || | | |||||||||||| | || ||| | ||||||||| | |||||||||||||||    
T  43387448 cttgatgcatcacaatattctctatattgaggataacgaaattctaacccgtgcttggcacg 43387509  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 30002059 - 30002105
Alignment:
Q  259 gacgaaattccagcccgtgcttggcacgggtgtctatgctagtatat 305  Q
    ||||| |||| ||||||||||||||||| ||||| ||||||||||||    
T  30002059 gacgacattctagcccgtgcttggcacgagtgtccatgctagtatat 30002105  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 19066029 - 19066074
Alignment:
Q  257 ttgacgaaattccagcccgtgcttggcacgggtgtctatgctagta 302  Q
    ||||||||| || |||||||||||||||||||| || |||||||||    
T  19066029 ttgacgaaagtctagcccgtgcttggcacgggtttccatgctagta 19066074  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 19113919 - 19113964
Alignment:
Q  257 ttgacgaaattccagcccgtgcttggcacgggtgtctatgctagta 302  Q
    ||||||||| || |||||||||||||||||||| || |||||||||    
T  19113919 ttgacgaaagtctagcccgtgcttggcacgggtttccatgctagta 19113964  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 8313197 - 8313153
Alignment:
Q  257 ttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||||| ||||| |||||||||||||||||| |||| ||||||||    
T  8313197 ttgacggaattctagcccgtgcttggcacggatgtccatgctagt 8313153  T

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Target: scaffold0380 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 14458 - 14347
Alignment:
Q  25 gatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacattt 124  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||| | |||| |||||||||| ||||| | | ||||||||| |    
T  14458 gatatgatatcaccattaagacttatggaggagccaacacttgtgtgaatcaacacattgaagaaagggcaatcacacaagtgagactaatgttacatct 14359  T
Q  125 tcatccaaaatt 136  Q
    ||||||||||||    
T  14358 tcatccaaaatt 14347  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 33014030 - 33014218
Alignment:
Q  26 atatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacatttt 125  Q
    ||||||||||||||||| ||||||   ||||| |||| ||||||||| ||||||||||||| ||| | ||| ||||| ||||| ||||||||  ||||||    
T  33014030 atatgatatcaccattgggacttacatgggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaagtgagaatgatgtcgcatttt 33014129  T
Q  126 catccaaaattaatttaaagtcttaaatatgtgagtttattttcacttatttactcttcaacctccaatattttatccaatattgagatttaa 218  Q
    |||| ||||||    | ||| ||| | ||| ||||||| |||||| ||||||  ||||| |||||||||||||||||||||  ||||||||||    
T  33014130 catctaaaatt----ttaagactttagtatatgagttttttttcatttatttgttcttcgacctccaatattttatccaatgatgagatttaa 33014218  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 38016086 - 38016182
Alignment:
Q  25 gatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgttacat 122  Q
    ||||||||||| |||||| ||||||||||| ||||| | |||||||||||||| | |||||| ||||||||||||||| ||| |||||||||||||||    
T  38016086 gatatgatatcgccattgggacttatgggg-agccagcacttgtgtgaatcgatatattgcagaaagagcaatcacacaagtaataatgatgttacat 38016182  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 50473 - 50548
Alignment:
Q  157 tgagtttattttcacttatttactcttcaacctccaatattttatccaatattgagatttaacatacatttaatac 232  Q
    ||||||| |||||||||||||| |||  |||||||||||||||||||||| | ||||||||||  ||| |||||||    
T  50473 tgagttttttttcacttatttattctctaacctccaatattttatccaatgtggagatttaactcacacttaatac 50548  T

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Target: scaffold0284 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 3042 - 3091
Alignment:
Q  257 ttgacgaaattccagcccgtgcttggcacgggtgtctatgctagtatatt 306  Q
    |||||||||||| ||||||||||||||||||||||| || ||||| ||||    
T  3042 ttgacgaaattctagcccgtgcttggcacgggtgtccatactagtgtatt 3091  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 40396 - 40351
Alignment:
Q  260 acgaaattccagcccgtgcttggcacgggtgtctatgctagtatat 305  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||    
T  40396 acgaaattctagcccgtgcttggcacgggtttctaagctagtatat 40351  T

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Target: scaffold0191 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 4868 - 4817
Alignment:
Q  250 cttaaggttgacgaaattccagcccgtgcttggcacgggtgtctatgctagt 301  Q
    |||||| |||||| ||||| |||||||||||||||||| |||| ||||||||    
T  4868 cttaagtttgacggaattctagcccgtgcttggcacggatgtccatgctagt 4817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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