View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_high_1 (Length: 776)
Name: NF14041_high_1
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 19 - 772
Target Start/End: Original strand, 10449400 - 10450153
Alignment:
| Q |
19 |
gaaagacacttgcatctgccacaaaaagatcctccatttcccatgtctcccctgtctccttcaccaccgattccttcggattagatcccatccgacaaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10449400 |
gaaagacacttgcatctgccacaaaaagatcctccacttcccatgtctcccctgtctccttcaccaccgattccttcggattagatcccatccgacaaga |
10449499 |
T |
|
| Q |
119 |
ccccatctgatgtgccgagcacaaaggcgttgaaaggtctgttaacgaccttgaactttcctttgtaacaaattgctcaaattcatggtaactcgcattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10449500 |
ccccatctgatgtgccgagcacaaaggcgttgaaaggtctgttaacgaccttgaactttcctttttaacaaattgctcaaattcatggtaactcgcattc |
10449599 |
T |
|
| Q |
219 |
tttacatttaaggtatttcccttgttatgatgagttccaatttcttcagcgccggctgcagccagaattctcagtaccttatcaattcccttctgtaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10449600 |
tttacatttaaggtatttcccttgttatgatgagttccaatttcttcagcaccggctgcagccagaattctcagtaccttatcaattcccttctgtaaat |
10449699 |
T |
|
| Q |
319 |
tctcttcatcaacatcttccatttcataacttatacgacttggcgaatgcacatttcccgatccttgatcccttgctaatgcaaatatatgagcagtcct |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10449700 |
tctcttcatcaacatcttccatttcataacttatacgacttggcgaatgcacatttcccgatccttgatcccttgctaatgcaaatatatgagcagtcct |
10449799 |
T |
|
| Q |
419 |
tgaaaactttcgcattctatcttttatatcgcttccagaaacccacggcatgacaatcgagaatgtaccaggatgcaatgcaggtgtttggatcaccgca |
518 |
Q |
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| T |
10449800 |
tgaaaactttcgcattctatcctttatatcgcttccagaaacccacggcatgacaatcgagaatgtaccaggatgcaatgcaggtgtttggatcaccgca |
10449899 |
T |
|
| Q |
519 |
ccgtatcctgatttctcaaactctgcgacaacaggagacattgctgtcattatccctccttcgtagctctttttccatgtctcgggccacacctcagatt |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10449900 |
ccgtatcctgatttctcaaactctgcgacaacaggagacattgctgtcattatccctccttcgtagctctttttccatgtctcaggccacacctcagatg |
10449999 |
T |
|
| Q |
619 |
cacctgtaggttctacaggtgtatcagggaagtagccccaggccattaccaccggatgaagatgcaagtttctccctatgnnnnnnnnnnnnaatccgct |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10450000 |
cacctgtaggttctacaggtgtatcagggaagtagccccaggccattaccaccggatgaagatgcaagtttctccctatgttgttattttttaatccgct |
10450099 |
T |
|
| Q |
719 |
tcttttaagcaatgatggagtattgagtgttccacaagctacaattgtgtcctt |
772 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
10450100 |
tcttttaagcaatgatggagtattgagtgttccacaagctacaattgtgacctt |
10450153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 6e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 43 - 592
Target Start/End: Complemental strand, 30495988 - 30495439
Alignment:
| Q |
43 |
aaagatcctccatttcccatgtctcccctgtctccttcaccaccgattccttcggattagatcccatccgacaagaccccatctgatgtgccgagcacaa |
142 |
Q |
| |
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||||| |||| | ||||||||| ||||| || | ||||| |||||||| |||||||||| ||||| || || ||||||||||||||||||||| | |
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| T |
30495988 |
aaagaccctctacttcccatgtttcccccgtttggttcacaaccgattctttcggattagtacccatacggcagctccccatctgatgtgccgagcatac |
30495889 |
T |
|
| Q |
143 |
aggcgttgaaaggtctgttaacgaccttgaactttcctttgtaacaaattgctcaaattcatggtaactcgcattctttacatttaaggtatttcccttg |
242 |
Q |
| |
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|| || || ||||| ||||||| | |||| ||||| | | ||||||| |||||||||||| || ||| | | ||| ||||||||| | ||||||| |
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| T |
30495888 |
tggtgtcgataggtcagttaacggcattgagctttcttccttcacaaatttctcaaattcatgatagctcacttccttaacatttaagctccttccctta |
30495789 |
T |
|
| Q |
243 |
ttatgatgagttccaatttcttcagcgccggctgcagccagaattctcagtaccttatcaattcccttctgtaaattctcttcatcaacatcttccattt |
342 |
Q |
| |
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|||| ||| || |||||||||||||| || ||||| |||||||||||||| ||||| |||||||| || ||||||||||||| || |||| || ||| | |
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| T |
30495788 |
ttattatgtgtcccaatttcttcagctccagctgctgccagaattctcagcaccttctcaattcctttgtgtaaattctctttgtctacatttttcatct |
30495689 |
T |
|
| Q |
343 |
cataacttatacgacttggcgaatgcacatttcccgatccttgatcccttgctaatgcaaatatatgagcagtccttgaaaactttcgcattctatcttt |
442 |
Q |
| |
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||| ||||||||| | || |||| |||| |||| ||||||||||||||||| | |||||||| |||||| || || |||||||| ||||| | |||||| |
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| T |
30495688 |
gatagcttatacgagtaggtgaatccacagttcctgatccttgatcccttgccagtgcaaatacatgagctgttctagaaaacttgcgcatacgatcttt |
30495589 |
T |
|
| Q |
443 |
tatatcgcttccagaaacccacggcatgacaatcgagaatgtaccaggatgcaatgcaggtgtttggatcaccgcaccgtatcctgatttctcaaactct |
542 |
Q |
| |
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|||||| |||||||| ||||||||| | || ||||| ||| |||||||||| ||||||||||||||||||||| ||||| | | ||| ||| |
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| T |
30495588 |
tatatccattccagaactccacggcattagaactgagaacaaacctggatgcaatgaaggtgtttggatcaccgcaccatatccagtagcgttaaagtct |
30495489 |
T |
|
| Q |
543 |
gcgacaacaggagacattgctgtcattatccctccttcgtagctcttttt |
592 |
Q |
| |
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|| ||||| | ||||||||||||||| || |||||||| ||||| ||||| |
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| T |
30495488 |
gcaacaactgtagacattgctgtcataattcctccttcatagcttttttt |
30495439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 635 - 698
Target Start/End: Complemental strand, 30495408 - 30495345
Alignment:
| Q |
635 |
aggtgtatcagggaagtagccccaggccattaccaccggatgaagatgcaagtttctccctatg |
698 |
Q |
| |
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||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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| T |
30495408 |
aggtgcatcagggaagtagccccaagccattgtcactggatgaagatgcaagtttctccctatg |
30495345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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