View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_high_10 (Length: 404)
Name: NF14041_high_10
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 45 - 370
Target Start/End: Complemental strand, 1845251 - 1844926
Alignment:
| Q |
45 |
agtgtatccaataatagaggtatttgtctatattaattattagcatcatggtaatggtgattccatgcattgtgaatctcttaatcgtgttcttcaagtt |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1845251 |
agtgtatccaataatagaggtatttgtctatattaattattagcatcatggtaatggtgattccatgcattgtgaatctcttaatcgtgttcttcaagtt |
1845152 |
T |
|
| Q |
145 |
gtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggttgagtcaattataaagttca |
244 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1845151 |
gtttgatagaccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggttgagtcaattataaagttca |
1845052 |
T |
|
| Q |
245 |
gtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataaacaatgctggaatacttgcaacatctcctagaatcac |
344 |
Q |
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|||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1845051 |
gtacttccgtgcggcaatggcttttgaattccgatctgcactgcttggtacaaatactaataaacaatgctggaatacttgcaacatctcctagaatcac |
1844952 |
T |
|
| Q |
345 |
agctgagggctacaattagtaatcac |
370 |
Q |
| |
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| ||||||||||| |||||||||||| |
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| T |
1844951 |
aactgagggctacgattagtaatcac |
1844926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 60 - 367
Target Start/End: Original strand, 1837998 - 1838304
Alignment:
| Q |
60 |
agaggtatttgtctatattaattattagcatcatggtaatggtgattccatgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccata |
159 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
1837998 |
agaggtattt-tcaatattaattattagcatcatggtaatgatgattccatgcattgtgaagatcttaatcgtgttcttcccgttgtttgataggccata |
1838096 |
T |
|
| Q |
160 |
acaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggc |
259 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1838097 |
acaaagattaaaggttggaatgaggatgcccacctcaaagcttttcaggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggc |
1838196 |
T |
|
| Q |
260 |
agtggcttttgaattccgatttgcactgcttggtacaaatactaataaacaatgctggaatacttgcaacatctcctagaatcacagctgagggctacaa |
359 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
1838197 |
agtggcttttggattccgatttgcactgctcggtacaaatactaataaacaatgctggaatacttgcaacatctcctagagtcacaactgagggctacga |
1838296 |
T |
|
| Q |
360 |
ttagtaat |
367 |
Q |
| |
|
| |||||| |
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|
| T |
1838297 |
taagtaat |
1838304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 125 - 367
Target Start/End: Complemental strand, 41382462 - 41382220
Alignment:
| Q |
125 |
ttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggt |
224 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
41382462 |
ttaattgtgttcttcccgttgtttgatagaccataacaaagattaaaggttggaatgaggatgcccacctcaaagctttttaggctgacctttcgtcggt |
41382363 |
T |
|
| Q |
225 |
tgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataaacaatgctggaatactt |
324 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
41382362 |
tgagtcaattataaagttcagtacttccttgcggcagtggcttttggattctgatttgcactgctcggtacagatactaataaacaatgctggaatactt |
41382263 |
T |
|
| Q |
325 |
gcaacatctcctagaatcacagctgagggctacaattagtaat |
367 |
Q |
| |
|
|| ||||||| |||| ||||||||||||||||| || |||||| |
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| T |
41382262 |
gccacatctcttagagtcacagctgagggctacgatcagtaat |
41382220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 41383892 - 41383823
Alignment:
| Q |
60 |
agaggtatttgtctatattaattattagcatcatggtaatggtgattccatgcattgtgaatctcttaat |
129 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
41383892 |
agaggtatttttctatattagttataagcatcatggtaatgatgattccatgcattgtgaatatcttaat |
41383823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 60 - 370
Target Start/End: Original strand, 18632673 - 18632983
Alignment:
| Q |
60 |
agaggtatttgtctatattaattattagcatcatggtaatggtgattccatgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccata |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||| |
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| T |
18632673 |
agaggtatttgtctatattaattattagcatcatggtaatggtgattccttgcattgtaaatctcgtaatcgtgttcttcaagttgttcgataggccata |
18632772 |
T |
|
| Q |
160 |
acaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||| |
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| T |
18632773 |
acaaagattaaaggttggaatgaagatgttcacctcaaagcttttcagactgaccttttgtcggtggagtcaattataaagttcagtacttccctacggc |
18632872 |
T |
|
| Q |
260 |
agtggcttttgaattccgatttgcactgcttggtacaaatactaataaacaatgctggaatacttgcaacatctcctagaatcacagctgagggctacaa |
359 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18632873 |
agtggtttttggattccgatttgcactgctcggtacaaatactaatatacaatgctggaatacttgcaacatctcctagaatcacagctgagggctaaga |
18632972 |
T |
|
| Q |
360 |
ttagtaatcac |
370 |
Q |
| |
|
||||||||||| |
|
|
| T |
18632973 |
ttagtaatcac |
18632983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 60 - 367
Target Start/End: Complemental strand, 18639402 - 18639096
Alignment:
| Q |
60 |
agaggtatttgtctatattaattattagcatcatggtaatggtgattccatgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccata |
159 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |
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|
| T |
18639402 |
agaggtattt-tcaatattaattattagcatcatggtaatgatgattccatgcattgtgaagatcttaatcgtgttcttcccgttgtttgatagaccata |
18639304 |
T |
|
| Q |
160 |
acaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggc |
259 |
Q |
| |
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| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
18639303 |
aaaaagattaaaggttggaatgaggatgcccacctcaaagcttttcaggctgatatttcgtcggctgagtcaattataaagttcggtacttccctgcggc |
18639204 |
T |
|
| Q |
260 |
agtggcttttgaattccgatttgcactgcttggtacaaatactaataaacaatgctggaatacttgcaacatctcctagaatcacagctgagggctacaa |
359 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | |
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|
| T |
18639203 |
aatggcttttggattccgatttgcactgctcggtacaaatactaataaacaatgctggaatacttgcaacatctcctagagtcacaactgagggctacga |
18639104 |
T |
|
| Q |
360 |
ttagtaat |
367 |
Q |
| |
|
| |||||| |
|
|
| T |
18639103 |
taagtaat |
18639096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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