View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_high_11 (Length: 393)
Name: NF14041_high_11
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 15761482 - 15761596
Alignment:
| Q |
147 |
cagtattttattattgttgattagatcaaatataaattgacagttaattggcctcaagaacataaatctatctctataaattagtgtagttcctttgtta |
246 |
Q |
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| T |
15761482 |
cagtattttattattgttgattatatcaaatataaattgacagttaattggcatcaagaacataaatctatctctataaattagtgtagttcctttgtta |
15761581 |
T |
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| Q |
247 |
gagaaaacaaatata |
261 |
Q |
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| T |
15761582 |
gagaaaacaaatata |
15761596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 15761599 - 15761687
Alignment:
| Q |
289 |
caaaaaattattatgccaatggaagaaggcatcacaattgagtacacacaagatggaactattgatcttaatggaaagcctgttctaag |
377 |
Q |
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| T |
15761599 |
caaaaaattattatgccaatggacgaaggcatcacaattgagtacacacaagatgggactattgatcttaatggaaaacctgttctaag |
15761687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 374
Target Start/End: Original strand, 15752937 - 15753094
Alignment:
| Q |
216 |
atctctataaattagtgtagttcctttgttagagaaaacaaatatatatttgctttgttgatgcttctagctccaaaaaat-tattatgccaatggaaga |
314 |
Q |
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| T |
15752937 |
atctctataaattagtatagttcatttgatggataacacaaaaatttatttgctttgttgaggctccta-----aaaaaatatattatggcaatggaaga |
15753031 |
T |
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| Q |
315 |
aggcatcac---aattgagtacacacaagatggaactattgatcttaatggaaagcctgttct |
374 |
Q |
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| T |
15753032 |
aggcatgattggaattgagtacacaaaagatggaactattgatcttaaaggaaattctgttct |
15753094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15761335 - 15761390
Alignment:
| Q |
1 |
ggaaaaagttattccatttgtttttatttaagttattccattctggtgaaaacttt |
56 |
Q |
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| T |
15761335 |
ggaaaaagttattccattttcttttttttaagttattccattctggttaaaacttt |
15761390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 15774934 - 15774983
Alignment:
| Q |
325 |
attgagtacacacaagatggaactattgatcttaatggaaagcctgttct |
374 |
Q |
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| T |
15774934 |
attgagtacacacaagatggaactgttgatcttaaaggaaaacctgttct |
15774983 |
T |
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