View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_high_13 (Length: 371)
Name: NF14041_high_13
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 66 - 360
Target Start/End: Original strand, 42733294 - 42733600
Alignment:
| Q |
66 |
atgcatgcaaaaattaacaattgcataagtatgtgaagagtgttgtaaattatttccaacgatactacaggaccaaatggtagaatatgagagccgtaaa |
165 |
Q |
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| T |
42733294 |
atgcatgcaaaaattaacaattgcataagtatgtgaagagtgttgtaaattatttccaacgatactacaggaccaaatggtagaatatgagagccgtaaa |
42733393 |
T |
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| Q |
166 |
attgcaaaa-taaaatatagcaagcggaattattgagaaaaacttatgtctcacataatttagata-----------taaagtttataaatggtgatacc |
253 |
Q |
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| T |
42733394 |
attgcaaaattaaaatatagcaagcggaattattgagaaaaactttctgatcacataatttagatataaagtttggttaaagtttataaatggtgatacc |
42733493 |
T |
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| Q |
254 |
ttccaccttataatcatttttaaagagttgagttatgctcaactgaaattctaatagaaaaccttgtgccttttcagctatgtccataataatttagtta |
353 |
Q |
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| T |
42733494 |
ttgcaccttataatcatttttaaagagttgagttatgcccaactcaaattctaatagaaaaccttgtgccttttcagctatgtccataagaatttagtta |
42733593 |
T |
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| Q |
354 |
attgatg |
360 |
Q |
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| T |
42733594 |
attgatg |
42733600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 42733233 - 42733279
Alignment:
| Q |
30 |
gtgaagctatgtagtctcaagcatctgaactaactaatgcatgcaaa |
76 |
Q |
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| T |
42733233 |
gtgaagctatgtagtctcaagcatctgaactaactaatgcatgcaaa |
42733279 |
T |
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