View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14041_high_14 (Length: 331)

Name: NF14041_high_14
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14041_high_14
NF14041_high_14
[»] chr6 (1 HSPs)
chr6 (92-160)||(9306644-9306712)
[»] scaffold0471 (1 HSPs)
scaffold0471 (92-169)||(11285-11361)
[»] chr4 (2 HSPs)
chr4 (92-169)||(24126682-24126758)
chr4 (92-160)||(24685510-24685578)
[»] chr2 (1 HSPs)
chr2 (92-169)||(25649492-25649568)
[»] chr1 (1 HSPs)
chr1 (92-160)||(49383996-49384064)
[»] chr7 (1 HSPs)
chr7 (92-160)||(15814877-15814946)


Alignment Details
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 9306712 - 9306644
Alignment:
Q  92 aagcaacaaccccacaacagtttcagttttgaatttgataacacaatcaaacaacaacacactcgtatt 160  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9306712 aagcaacaaccccacaatagtttcagttttgaatttgataacacaatcaagcaacaacacactcgtatt 9306644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 11285 - 11361
Alignment:
Q  92 aagcaacaaccccacaacagtttcagttttgaatttgataacacaatcaaacaacaacacactcgtattaagtttgag 169  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  11285 aagcaagaaccccacaatagtttcagttttgaatttgataacac-atcaagcaacaacacactcgtattaagtttgag 11361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 24126682 - 24126758
Alignment:
Q  92 aagcaacaaccccacaacagtttcagttttgaatttgataacacaatcaaacaacaacacactcgtattaagtttgag 169  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  24126682 aagcaagaaccccacaatagtttcagttttgaatttgataacac-atcaagcaacaacacactcgtattaagtttgag 24126758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 24685510 - 24685578
Alignment:
Q  92 aagcaacaaccccacaacagtttcagttttgaatttgataacacaatcaaacaacaacacactcgtatt 160  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  24685510 aagcaacaaccccacaatagtttcagttttaaatttgataactcaatcaagcaacaacacactcgtatt 24685578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 25649568 - 25649492
Alignment:
Q  92 aagcaacaaccccacaacagtttcagttttgaatttgataacacaatcaaacaacaacacactcgtattaagtttgag 169  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  25649568 aagcaacaaccccacaatagtttcagttttgaatttggtaacac-atcaagcaacaacacactcgtattaagtttgag 25649492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 49384064 - 49383996
Alignment:
Q  92 aagcaacaaccccacaacagtttcagttttgaatttgataacacaatcaaacaacaacacactcgtatt 160  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49384064 aagcaacaaccccacaatagtttcagttttaaatttgataacacaatcaagcaacaacacactcgtatt 49383996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 15814877 - 15814946
Alignment:
Q  92 aagcaacaaccccacaacagtttcagttttgaatttg-ataacacaatcaaacaacaacacactcgtatt 160  Q
    |||||||||||||| || ||||||||||||||||||| | || | |||||| ||||| ||||||||||||    
T  15814877 aagcaacaaccccaaaatagtttcagttttgaatttgaaaaagagaatcaagcaacatcacactcgtatt 15814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University