View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_high_23 (Length: 231)
Name: NF14041_high_23
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 21778460 - 21778657
Alignment:
| Q |
15 |
atcaatttaagagtgatattttattaaagggtagatgaaatgctgctaattaagatttgaattattacctattgtgtatttttgtatgaggttgattgaa |
114 |
Q |
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| T |
21778460 |
atcaatttaagagtgatattttattaaagggtagatgaaatgctgctaattaagatttgaattattacctattgtgtatttttgtatgaggttgattgaa |
21778559 |
T |
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| Q |
115 |
aattactcgtttatatttgatgcacatgttccagaacacttttttcatgcattttgaagcaagattgaacagaactttaagatagtttcgggaaaagt |
212 |
Q |
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| T |
21778560 |
aattactcgtttatatttgatgcacatgttccagaacacttttttcatgcatttagaagcaagattgaacagaactttaagatagtttcgggaaaagt |
21778657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 23144480 - 23144606
Alignment:
| Q |
50 |
tgaaatgctgctaattaagatttgaattattacctattgtgtatttttgtatgaggttgattgaaaattactcgtttatatttgatgcacatgttccaga |
149 |
Q |
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| T |
23144480 |
tgaaatgctgctaatttagatttta-----tacctattgtgtatttttgcctgaggattattaaaaattactcattataatttgatacacatgttccata |
23144574 |
T |
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| Q |
150 |
acacttttttcatgcattttgaagcaagattg |
181 |
Q |
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| T |
23144575 |
acttttttttcatacattgagaagcaagattg |
23144606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 23031395 - 23031453
Alignment:
| Q |
40 |
aaagggtagatgaaatgctgctaattaagatttgaattattacctattgtgtatttttgt |
99 |
Q |
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| T |
23031395 |
aaagggtatttgaaatgatgctgattcagatttgaatta-tacctattgtgtatttttgt |
23031453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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