View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_high_4 (Length: 517)
Name: NF14041_high_4
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Original strand, 26846399 - 26846892
Alignment:
| Q |
13 |
aatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatcatagcctatatgatccaaaaatatggtcatatttgttta |
112 |
Q |
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| T |
26846399 |
aatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatcatagcttatatgatccaaaaatatggtcatatttgttta |
26846498 |
T |
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| Q |
113 |
atgtttaaaataaaagaccgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgca |
212 |
Q |
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| T |
26846499 |
atgtttaaaataaaagactgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgca |
26846598 |
T |
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| Q |
213 |
gggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacagcaggtttcttctcacaggcgtaaagatcggtgcttcttcttcttgttc |
312 |
Q |
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| T |
26846599 |
gggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacaacaggtttcttctcacaggcgtaaagatcggtgcttcttcttcttgttc |
26846698 |
T |
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| Q |
313 |
aaatccaacaatttccaatggctcagaactaagaacctcaagtccaagaccaagttcattttcaagtgaaaataatagttgttctcaaagttcattcaaa |
412 |
Q |
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| T |
26846699 |
aaatccaacaatttccaatggctcagaactaagaacctcaagtccaagaccaagttcattttcaagtgaaaataatagttgttctcaaagttcattcaaa |
26846798 |
T |
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| Q |
413 |
gagaacatggtttgtgacacagtttcaaccagtagcatttccgaatacttaattgaaacgattcctggttactgcatggaggacctttttgatg |
506 |
Q |
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| T |
26846799 |
gagaacatggtttgtgacacagtttcaaccagtagcatttccgaatacttgattgaaacgattcctggttactgcatggaggacctttttgatg |
26846892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 54881118 - 54881202
Alignment:
| Q |
152 |
tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
236 |
Q |
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| T |
54881118 |
tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
54881202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 486
Target Start/End: Original strand, 54881424 - 54881476
Alignment:
| Q |
434 |
gtttcaaccagtagcatttccgaatacttaattgaaacgattcctggttactg |
486 |
Q |
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| T |
54881424 |
gtttcaacaagcagcatttctgaatacttgattgaaacaatacctggttactg |
54881476 |
T |
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